Include taxonomic lineage in the results

ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis

https://goo.gl/y3rZFD

GNU Affero General Public License v3.0

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Include taxonomic lineage in the results #35

Closed laughedelic closed 8 years ago

laughedelic commented 8 years ago

As requested by @rtobes.

Needs some more discussion and thinking.

laughedelic commented 8 years ago

Proposed format:

a list of ancestors name (rank);
the order is from the root

laughedelic commented 8 years ago

This is done with the following format:

1; 131567; 2; 1783272; 1239; 91061; 186826; 1300; 1301; 1311

(only IDs; lineage for the node 1311 going from the root 1)

It's published under the 1.0.0-M3-1794743 version.

laughedelic commented 8 years ago

LGTM. This seems to be very fast and work as expected.

@marina-manrique If you're in a hurry, you can use MG7 version 1.0.0-M3-1794743 with lineage. Otherwise, I'm going to fix #61 and finally release M3.

marina-manrique commented 8 years ago

@laughedelic thanks, please let me know when you release M3