Reorganize counts tables

[laughedelic]

Instead of two tables

• <SampleN>.bbh.counts.csv
• <SampleN>.lca.counts.csv

we need to have these files

1. <SampleN>.bbh.direct.absolute.counts.csv
2. <SampleN>.bbh.direct.frequency.csv
3. <SampleN>.bbh.accumulative.absolute.counts.csv
4. <SampleN>.bbh.accumulative.frequency.csv
5. <SampleN>.lca.direct.absolute.counts.csv
6. <SampleN>.lca.direct.frequency.csv
7. <SampleN>.lca.accumulative.absolute.counts.csv
8. <SampleN>.lca.accumulative.frequency.csv

Where

• For each <SampleN> we have separate
  • BBH tables
  • LCA tables
• For each algorithm (BBH/LCA):
  • direct counts
  • absolute
  • frequency
  • accumulative counts
  • absolute
  • frequency

Where frequency = (absolute count) / (number of merged reads in the sample)

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P.S. This explanation should go to the docs.

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In the end we have here (in M2) following files:

1. <SampleN>.bbh.direct.absolute.counts.csv
2. <SampleN>.bbh.accum.absolute.counts.csv
3. <SampleN>.lca.direct.absolute.counts.csv
4. <SampleN>.lca.accum.absolute.counts.csv

i.e. without frequency

[laughedelic]

I'll do this tomorrow. It's easy

[laughedelic]

I forgot about frequency when I wrote that it's easy. I made separate direct/accum tables. Merging and moving frequency thing to a separate issue.

[laughedelic]

Frequency tables in #20