Refine Blast filtering defaults for Illumina

ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis

https://goo.gl/y3rZFD

GNU Affero General Public License v3.0

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Closed laughedelic closed 8 years ago

laughedelic commented 8 years ago

@eparejatobes right?

eparejatobes commented 8 years ago

It's a good first approximation.

laughedelic commented 8 years ago

@eparejatobes this needs your input. Should I just take the current parameters from mg7-test?

eparejatobes commented 8 years ago

The only essential filter is keeping qcovs == 100, and applying it before the user-defined one/s.

laughedelic commented 8 years ago

ok about filters. What about default blast parameters? this?

eparejatobes commented 8 years ago

laughedelic commented 8 years ago

@eparejatobes review, please

eparejatobes commented 8 years ago

LGTM

laughedelic commented 8 years ago

👍