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ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis
https://goo.gl/y3rZFD
GNU Affero General Public License v3.0
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Test with the db.rna16s #77

Closed laughedelic closed 8 years ago

laughedelic commented 8 years ago

It appears to be quite inconvenient to have this pipeline code here, because it needs to be included in the fat-jar and introduces private era7-defaults dependency. I'm going to run it here, but then move to the db.rna16s repo.

laughedelic commented 8 years ago

Results are in s3://era7p/mg7-test/data/out/1.0.0-M4-3-g6baecfc/refdb/merge/

marina-manrique commented 8 years ago

Which is the input data of this test?

laughedelic commented 8 years ago

@marina-manrique the reference database itself (db.rna16s v0.8.0)

eparejatobes commented 8 years ago

what's the status of this?

laughedelic commented 8 years ago

@eparejatobes it's done in the db.rna16s repo (see https://github.com/ohnosequences/mg7/pull/77#issuecomment-224445583). This was some intermediate codebase for the pipeline. I think I will just close this PR.