update the assignment algorithms section

ohnosequences / mg7

Configurable and scalable 16S metagenomics data analysis

https://goo.gl/y3rZFD

GNU Affero General Public License v3.0

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update the assignment algorithms section #89

Closed eparejatobes closed 7 years ago

eparejatobes commented 8 years ago

This is now fairly different from the preprint version. We need to

[x] describe again the LCA (which is simpler in this case) and why this is a good idea because of having a "clean" ref DB. Include query coverage settings etc.
[ ] Describe the other algorithm #85, and why it could be useful
[ ] Update the LCA and BBH figure
[x] Mention how different settings can be tuned for different technologies, quality, etc.

eparejatobes commented 8 years ago

cc @rtobes @marina-manrique

eparejatobes commented 8 years ago

@rtobes @marina-manrique please check this. It'd really helpful if any of you could write something about the BBH algorithm, I can improve the wording if I have a starting point.

Also, we need to update the figure for LCA and BBH.

laughedelic commented 8 years ago

@rtobes you can check the latest PDF from this branch by this link:

https://github.com/ohnosequences/mg7/blob/update/assignment/algorithms/paper/89/docs/mg7-paper/out/paper.pdf

rtobes commented 8 years ago

@eparejatobes, I have prepared a docx with the description of the algorithm and 3 figures (The figures are also inserted in the docx file). Where do you want that I put these files?