issues
search
ohsu-cedar-comp-hub
/
WGS-nextflow-workflow
Apache License 2.0
3
stars
1
forks
source link
update mark_duplicates and bwamem
#29
Closed
rlancaster96
closed
5 months ago
rlancaster96
commented
6 months ago
added
\\t
delimiter to bwamem to address samtools duplicate PG ID issue and changed basename to simplename for cleaner filename output
edited syntax of mark duplicates script to avoid nextflow parsing "-I" argument as a command
\\t
delimiter to bwamem to address samtools duplicate PG ID issue and changed basename to simplename for cleaner filename output