[WIP] Sliced fastq test

ohsu-cedar-comp-hub / WGS-nextflow-workflow

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[WIP] Sliced fastq test #43

Closed rlancaster96 closed 5 months ago

rlancaster96 commented 5 months ago

note: I wasn't thinking and I rebased this from main, so there are file changes that are not directly related to this PR that got merged into it. (file changes for snpeff dockerfile and example params file).

added sorting step after mark duplicates
edits to include params.ID