Add Caveman to variant calling pipeline - Githubissues

ohsu-cedar-comp-hub / WGS-nextflow-workflow

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Add Caveman to variant calling pipeline #67

Open elisabethgoldman opened 5 months ago

elisabethgoldman commented 5 months ago

Simpler, containerized implementation of CaVEMan caller:

https://github.com/cancerit/cgpCaVEManWrapper

singularity pull docker://quay.io/wtsicgp/pcap-core:5.4.2

More modular C-based implementation of CaVEMan caller:

https://github.com/cancerit/CaVEMan/blob/dev/setup.sh

rlancaster96 commented 5 months ago

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6097605/ caveman paper