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ohsu-comp-bio / cwl-tes

cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Apache License 2.0
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[WIP] freshen cwltool, cwltest versions #21

Closed mr-c closed 6 years ago

adamstruck commented 6 years ago

I'd prefer to get #16 than just bump the versions.

mr-c commented 6 years ago

Ah, I have more commits coming here. I don't know anything about funnel, but I do know cwltool (and the big breaking changes we made) so maybe we could start with the cwltool side first?

adamstruck commented 6 years ago

Sorry, the other PR's name is misleading. The main purpose of it was to substantially simplify the cwl-tes code base to rely more heavily on cwltool.

adamstruck commented 6 years ago

I bumped the version as you did in the other PR, but now realize that cwltool made substantial changes (i.e. no more kwargs being pass around).

Either work from this PR or take over / fork my previous one. Whatever is easiest for you.

mr-c commented 6 years ago

@adamstruck This PR doesn't make use of the new parallel runner yet, so lets start with it and then continue with #16 once https://github.com/common-workflow-language/cwltool/pull/800 is done