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ohsu-comp-bio / funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.
https://ohsu-comp-bio.github.io/funnel
MIT License
121 stars 32 forks source link

build(deps): bump the dependabot group across 1 directory with 15 updates #1012

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 3 months ago

Bumps the dependabot group with 12 updates in the / directory:

Package From To
cloud.google.com/go/pubsub 1.39.0 1.40.0
github.com/aws/aws-sdk-go 1.54.5 1.54.16
github.com/docker/docker 27.0.0+incompatible 27.0.3+incompatible
github.com/getkin/kin-openapi 0.125.0 0.126.0
github.com/go-test/deep 1.1.0 1.1.1
github.com/prometheus/common 0.54.0 0.55.0
go.mongodb.org/mongo-driver 1.15.1 1.16.0
golang.org/x/crypto 0.24.0 0.25.0
golang.org/x/net 0.26.0 0.27.0
google.golang.org/grpc 1.64.0 1.65.0
k8s.io/api 0.31.0-alpha.2 0.31.0-alpha.3
k8s.io/client-go 0.31.0-alpha.2 0.31.0-alpha.3

Updates cloud.google.com/go/pubsub from 1.39.0 to 1.40.0

Commits


Updates github.com/aws/aws-sdk-go from 1.54.5 to 1.54.16

Release notes

Sourced from github.com/aws/aws-sdk-go's releases.

Release v1.54.16 (2024-07-08)

Service Client Updates

  • service/codedeploy: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/devicefarm: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/dms: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/elasticbeanstalk: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/email: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/es: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/firehose: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/gamelift: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/qapps: Updates service API, documentation, waiters, paginators, and examples
  • service/route53resolver: Updates service API

Release v1.54.15 (2024-07-05)

Service Client Updates

  • service/acm: Updates service API and documentation
    • Documentation updates, including fixes for xml formatting, broken links, and ListCertificates description.
  • service/ecr: Updates service API
    • This release for Amazon ECR makes change to bring the SDK into sync with the API.
  • service/payment-cryptography-data: Updates service API and documentation
  • service/qbusiness: Updates service API and documentation

Release v1.54.14 (2024-07-03)

Service Client Updates

  • service/application-autoscaling: Updates service documentation
  • service/directconnect: Updates service documentation
    • This update includes documentation for support of new native 400 GBps ports for Direct Connect.
  • service/organizations: Updates service API and documentation
    • Added a new reason under ConstraintViolationException in RegisterDelegatedAdministrator API to prevent registering suspended accounts as delegated administrator of a service.
  • service/rekognition: Updates service API and documentation
    • This release adds support for tagging projects and datasets with the CreateProject and CreateDataset APIs.
  • service/workspaces: Updates service API
    • Fix create workspace bundle RootStorage/UserStorage to accept non null values

Release v1.54.13 (2024-07-02)

... (truncated)

Commits


Updates github.com/docker/docker from 27.0.0+incompatible to 27.0.3+incompatible

Release notes

Sourced from github.com/docker/docker's releases.

v27.0.3

27.0.3

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

Bug fixes and enhancements

  • Fix a regression that incorrectly reported a port mapping from a host IPv6 address to an IPv4-only container as an error. moby/moby#48090
  • Fix a regression that caused duplicate subnet allocations when creating networks. moby/moby#48089
  • Fix a regression resulting in "fail to register layer: failed to Lchown" errors when trying to pull an image with rootless enabled on a system that supports native overlay with user-namespaces. moby/moby#48086

v27.0.2

27.0.2

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

Bug fixes and enhancements

Removed

  • api/types: deprecate ContainerJSONBase.Node field and ContainerNode type. These definitions were used by the standalone ("classic") Swarm API, but never implemented in the Docker Engine itself. moby/moby#48055

v27.0.1

27.0.1

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

New

  • containerd image store: Add --platform flag to docker image push and improve the default behavior when not all platforms of the multi-platform image are available locally. docker/cli#4984, moby/moby#47679
  • Add support to docker stack deploy for driver_opts in a service's networks. docker/cli#5125
  • Consider additional /usr/local/libexec and /usr/libexec paths when looking up the userland proxy binaries by a name with a docker- prefix. moby/moby#47804

Bug fixes and enhancements

... (truncated)

Commits


Updates github.com/getkin/kin-openapi from 0.125.0 to 0.126.0

Release notes

Sourced from github.com/getkin/kin-openapi's releases.

v0.126.0

What's Changed

New Contributors

Full Changelog: https://github.com/getkin/kin-openapi/compare/v0.125.0...v0.126.0

Commits
  • 2692f43 openapi3: allow YAML-marshaling invalid specs (#977)
  • 4144c56 openapi3: add support for number and integer format validators (#976)
  • 4b53bf6 openapi3: add a test for additionalProperties: false validation (#975)
  • 0ed9f5d openapi3: improve internalization ref naming to avoid collisions (#955)
  • a27c9e7 openapi3: resolve recursive file references (#974)
  • 42a2d80 openapi3: improve ipv6 validation (#971)
  • fe47dca openapi3: implement circular reference backtracking (#970)
  • 57624b3 openapi3: allow Extensions next to $ref in SchemaRef (#901)
  • 7ec3129 Replace interface{} with any (#966)
  • 3aa9b4e Move paragraph back to its correct section (#967)
  • Additional commits viewable in compare view


Updates github.com/go-test/deep from 1.1.0 to 1.1.1

Release notes

Sourced from github.com/go-test/deep's releases.

v1.1.1

What's Changed

New Contributors

Full Changelog: https://github.com/go-test/deep/compare/v1.1.0...v1.1.1

Changelog

Sourced from github.com/go-test/deep's changelog.

v1.1.1 released 2024-06-23

  • Added NilPointersAreZero option: causes a nil pointer to be equal to a zero value (PR #61) (@​seveas)
  • Updated test matrix to go1.22, go1.21, and go1.20
Commits
  • 9e863ff Release v1.1.1
  • dc5b2f6 Update SECURITY.md
  • 185886d Restore 100% test coverage (NilPointersAreZero case)
  • 47ae1b8 Merge pull request #61 from seveas/nil-pointers-are-zero
  • 93c35ac Merge branch 'master' into nil-pointers-are-zero
  • 2982c5c Update test matrix to latest 3 Go versions
  • 2b8252e Add an option to consider nil pointers to be equivalent to zero values
  • 95fb3b1 Merge pull request #58 from bartleyg/patch-1
  • 1127c84 fix copy pasta test
  • 7ff4e92 Update changelog for v1.1.0
  • See full diff in compare view


Updates github.com/prometheus/common from 0.54.0 to 0.55.0

Release notes

Sourced from github.com/prometheus/common's releases.

v0.55.0

What's Changed

New Contributors

Full Changelog: https://github.com/prometheus/common/compare/v0.54.0...v0.55.0

Commits
  • 0c7b585 Merge pull request #649 from rajagopalanand/13364
  • 804fbbe Update common Prometheus files (#660)
  • 3f20456 Bump golang.org/x/net from 0.25.0 to 0.26.0 (#657)
  • e31eeaa Bump google.golang.org/protobuf from 1.34.1 to 1.34.2 (#658)
  • 3236a12 Bump golang.org/x/oauth2 from 0.20.0 to 0.21.0 (#656)
  • 1cfb464 Bump github.com/aws/aws-sdk-go from 1.53.14 to 1.54.7 in /sigv4 (#659)
  • ab322ea chore: add HumanizeTimestamp; make ConvertToFloat exportable (#654)
  • 04635d2 Merge pull request #655 from yeya24/change-omit-empty
  • c4974e5 fix test
  • 43f0db5 set http_headers to be omit empty
  • Additional commits viewable in compare view


Updates go.mongodb.org/mongo-driver from 1.15.1 to 1.16.0

Release notes

Sourced from go.mongodb.org/mongo-driver's releases.

MongoDB Go Driver 1.16.0

The MongoDB Go Driver Team is pleased to release version 1.16.0 of the official Go driver.

Release Notes

This release adds the ability to specify an index type when creating an Atlas Search Index, reduces memory usage when using "zstd" compression, and upgrades dependencies.

Specify type when creating a search index

Allow specifying index type via SearchIndexModel.Options.SetType when creating a search index.

Reduce zstd memory usage

When "zstd" compression is enabled, static memory usage and per-operation memory usage are reduced.

Upgrade dependencies

  • Bump golang.org/x/crypto from 0.17.0 to 0.22.0
  • Bump github.com/google/go-cmp from 0.5.2 to 0.6.0
  • Bump github.com/montanaflynn/stats from 0.0.0-20171201202039-1bf9dbcd8cbe to 0.7.1
  • Bump golang.org/x/sync from 0.1.0 to 0.7.0
  • Bump github.com/golang/snappy from 0.0.1 to 0.0.4

For a full list of tickets included in this release, please see the links below:

Full Changelog: v1.15.1...v1.16.0

Documentation for the Go driver can be found on pkg.go.dev and the MongoDB documentation site. BSON library documentation is also available on pkg.go.dev. Questions and inquiries can be asked on the MongoDB Developer Community. Bugs can be reported in the Go Driver project in the MongoDB JIRA where a list of current issues can be found. Your feedback on the Go driver is greatly appreciated!

Commits


Updates golang.org/x/crypto from 0.24.0 to 0.25.0

Commits
  • 9fadb0b go.mod: update golang.org/x dependencies
  • a6a393f all: bump go.mod version and drop compatibility shims
  • 1c74500 ssh/test: make struct comment match struct name
  • d4e7c9c ssh: fail client auth immediately on receiving disconnect message
  • See full diff in compare view


Updates golang.org/x/net from 0.26.0 to 0.27.0

Commits
  • e2310ae go.mod: update golang.org/x dependencies
  • 77708f7 quic: skip tests which depend on unimplemented UDP functions on Plan 9
  • 9617c63 http2: avoid Transport hang with Connection: close and AllowHTTP
  • See full diff in compare view


Updates google.golang.org/api from 0.184.0 to 0.186.0

Release notes

Sourced from google.golang.org/api's releases.

v0.186.0

0.186.0 (2024-06-25)

Features

v0.185.0

0.185.0 (2024-06-18)

Features

Bug Fixes

  • internal/gensupport: Update shouldRetry for GCS uploads (#2634) (ea513cb)
Changelog

Sourced from google.golang.org/api's changelog.

0.186.0 (2024-06-25)

Features

0.185.0 (2024-06-18)

Features

Bug Fixes

  • internal/gensupport: Update shouldRetry for GCS uploads (#2634) (ea513cb)
Commits


Updates google.golang.org/grpc from 1.64.0 to 1.65.0

Release notes

Sourced from google.golang.org/grpc's releases.

Release 1.65.0

Dependencies

  • Change support policy to cover only the latest TWO releases of Go, matching the policy for Go itself. See #7249 for more information. (#7250)
  • Update x/net/http2 to address CVE-2023-45288 (#7282)

Behavior Changes

  • credentials/tls: clients and servers will now reject connections that don't support ALPN when environment variable GRPC_ENFORCE_ALPN_ENABLED is set to "true" (case insensitive). (#7184)
    • NOTE: this behavior will become the default in a future release.
  • metadata: remove String method from MD to make printing more consistent (#7373)

New Features

  • grpc: add WithMaxCallAttempts to configure gRPC's retry behavior per-channel. (#7229)

Bug Fixes

  • ringhash: properly apply endpoint weights instead of ignoring them (#7156)
  • xds: fix a bug that could cause xds-enabled servers to stop accepting new connections after handshaking errors (#7128)

Release 1.64.1

Dependencies

  • Update x/net/http2 to address CVE-2023-45288 (#7352)
  • metadata: remove String method from MD to make printing consistent (#7374)
Commits
  • 2da9769 Change version to 1.65.0 (#7306)
  • ede96b7 metadata: remove String method (#7373)
  • 64be203 grpc: Readd pick first name (#7336) (#7341)
  • 25e33a6 examples: Add CSM Observability example (#7302) (#7318)
  • 04a5f46 xds/internal/xdsclient: Emit unknown for CSM Labels if not present in CDS (#7...
  • cff5c3e stats/opentelemetry: Add e2e testing for CSM Observability (#7279) (#7316)
  • 9b970fd dns: fix constant 30s backoff for re-resolution (#7262) (#7311)
  • 6d23620 documentation: on server, use FromIncomingContext for retrieving context and...
  • 7e5898e xds: unify xDS client creation APIs meant for testing (#7268)
  • 5d7bd7a interop/xds: Interop client and server changes for CSM Observability (#7280)
  • Additional commits viewable in compare view


Updates k8s.io/api from 0.31.0-alpha.2 to 0.31.0-alpha.3

Commits
  • 97cfeed Update dependencies to v0.31.0-alpha.3 tag
  • e7b4471 Merge pull request #125021 from aojea/servicecidrbeta
  • f41eb5f Merge pull request #125116 from pohly/dra-one-of-source
  • 48abdb0 Merge pull request #122047 from aojea/treeless
  • 70c0174 Merge pull request #125759 from dims/bump-prometheus/common-v0.55.0
  • 236105a Merge pull request #125162 from sttts/sttts-code-generator-core-group
  • 78bd910 Merge pull request #125766 from dims/update-moby/spdystream-to-v0.4.0
  • 19c5afd generated
  • 77d4ad8 Merge pull request #125600 from thockin/plus_default_deprecated_volumes
  • ea15fac document the API with the details about the allocation CIDR ranges
  • Additional commits viewable in compare view


Updates k8s.io/apimachinery from 0.31.0-alpha.2 to 0.31.0-alpha.3

Commits
  • ef4453d fix: enable bool-compare rule from testifylint linter (#125135)
  • adf72dd Merge pull request #125759 from dims/bump-prometheus/common-v0.55.0
  • 1dfa5d9 Merge pull request #125766 from dims/update-moby/spdystream-to-v0.4.0
  • a0fb8b1 Merge pull request #125646 from HirazawaUi/apply-null
  • a2e9f2d Update moby/spdystream to v0.4.0
  • 6deaf26 Bump prometheus/common to v0.55.0
  • 65a3763 Merge pull request #125712 from benluddy/remove-cbor-test-skips
  • 276559d Merge pull request #125745 from BenTheElder/ping-ping
  • 11ede0a bump github.com/moby/spdystream to v0.3.0
  • 93912e7 Merge pull request #125422 from benluddy/cbor-disable-binarymarshaler
  • Additional commits viewable in compare view


Updates k8s.io/client-go from 0.31.0-alpha.2 to 0.31.0-alpha.3

Commits
  • 67d4de7 Update dependencies to v0.31.0-alpha.3 tag
  • ab86e03 Merge pull request #125021 from aojea/servicecidrbeta
  • 4dec662 Merge pull request #125116 from pohly/dra-one-of-source
  • ae071bc Merge pull request #125759 from dims/bump-prometheus/common-v0.55.0
  • 4b5beb6 Merge pull request #124917 from vinayakankugoyal/kep4633
  • ef4b2f6 Merge pull request #125766 from dims/update-moby/spdystream-to-v0.4.0
  • 96c49b6 Merge pull request #125600 from thockin/plus_default_deprecated_volumes
  • a2665af Update moby/spdystream to v0.4.0
  • 66473c1 Bump prometheus/common to v0.55.0
  • b043b56 Merge pull request #125745 from BenTheElder/ping-ping
  • Additional commits viewable in compare view


Updates google.golang.org/genproto/googleapis/api from 0.0.0-20240610135401-a8a62080eff3 to 0.0.0-20240617180043-68d350f18fd4

Commits


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netlify[bot] commented 3 months ago

Deploy Preview for ohsu-comp-bio-funnel canceled.

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Latest commit 793efe640b827166c9749d2e1ce48100bd33b9a1
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dependabot[bot] commented 3 months ago

Superseded by #1013.