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ohsu-comp-bio / funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.
https://ohsu-comp-bio.github.io/funnel
MIT License
121 stars 32 forks source link

build(deps): bump the dependabot group across 1 directory with 16 updates #1038

Closed dependabot[bot] closed 1 month ago

dependabot[bot] commented 1 month ago

Bumps the dependabot group with 9 updates in the / directory:

Package From To
cloud.google.com/go/datastore 1.17.1 1.18.0
github.com/aws/aws-sdk-go 1.55.2 1.55.5
github.com/docker/docker 27.1.1+incompatible 27.1.2+incompatible
github.com/getkin/kin-openapi 0.126.0 0.127.0
github.com/prometheus/client_golang 1.19.1 1.20.1
go.mongodb.org/mongo-driver 1.16.0 1.16.1
k8s.io/apimachinery 0.31.0-beta.0 0.32.0-alpha.0
k8s.io/client-go 0.31.0-beta.0 0.32.0-alpha.0
github.com/grpc-ecosystem/grpc-gateway/v2 2.20.0 2.22.0

Updates cloud.google.com/go/datastore from 1.17.1 to 1.18.0

Release notes

Sourced from cloud.google.com/go/datastore's releases.

dlp: v1.18.0

1.18.0 (2024-08-20)

Features

  • dlp: Add support for Go 1.23 iterators (84461c0)
  • dlp: File store data profiles can now be filtered by type and storage location (84461c0)
  • dlp: Inspect template modified cadence discovery config for Cloud SQL (84461c0)

Documentation

  • dlp: Small improvements (84461c0)

retail: v1.18.0

1.18.0 (2024-08-20)

Features

  • retail: Add support for Go 1.23 iterators (84461c0)

security: v1.18.0

1.18.0 (2024-08-20)

Features

  • security: Add support for Go 1.23 iterators (84461c0)

datastore: v1.18.0

1.18.0 (2024-08-21)

Features

  • datastore: Add support for Go 1.23 iterators (84461c0)
  • datastore: Start generating datastorepb protos (946a5fc)

Bug Fixes

  • datastore: Bump google.golang.org/api@v0.187.0 (8fa9e39)
  • datastore: Bump google.golang.org/grpc@v1.64.1 (8ecc4e9)
  • datastore: Ignore field mismatch errors (#8694) (6625d12)
  • datastore: Update dependencies (257c40b)
  • datastore: Update google.golang.org/api to v0.191.0 (5b32644)
Changelog

Sourced from cloud.google.com/go/datastore's changelog.

1.18.0 (2023-03-22)

Features

  • documentai: Add ImportProcessorVersion in v1beta3 (c967961)

1.17.0 (2023-03-15)

Features

  • documentai: Added hints.language_hints field in OcrConfig (#7522) (b2c40c3)

1.16.0 (2023-02-22)

Features

1.15.0 (2023-02-14)

⚠ BREAKING CHANGES

  • documentai: The TrainProcessorVersion parent was incorrectly annotated.

Features

  • documentai: Add REST client (06a54a1)
  • documentai: Added advanced_ocr_options field in OcrConfig (45c70e3)
  • documentai: Added EvaluationReference to evaluation.proto (#7290) (4623db8)
  • documentai: Added field_mask field in DocumentOutputConfig.GcsOutputConfig in document_io.proto (2a0b1ae)
  • documentai: Added font_family to document.proto feat: added ImageQualityScores message to document.proto feat: added PropertyMetadata and EntityTypeMetadata to document_schema.proto (9c5d6c8)
  • documentai: Added TrainProcessorVersion, EvaluateProcessorVersion, GetEvaluation, and ListEvaluations v1beta3 APIs feat: added evaluation.proto feat: added document_schema field in ProcessorVersion processor.proto feat: added image_quality_scores field in Document.Page in document.proto feat: added font_family field in Document.Style in document.proto (ac0c5c2)
  • documentai: Exposed GetProcessorType to v1 (447afdd)
  • documentai: Exposed GetProcessorType to v1beta3 (447afdd)
  • documentai: Rewrite signatures in terms of new location (3c4b2b3)
  • documentai: Start generating stubs dir (de2d180)

Miscellaneous Chores

1.8.0 (2023-02-14)

... (truncated)

Commits


Updates cloud.google.com/go/pubsub from 1.40.0 to 1.41.0

Commits
  • f371928 chore(main): release pubsub 1.41.0 (#10469)
  • 443e0ee chore: release main (#10595)
  • 928f1a7 fix(bigtable/emulator): Sending empty row in SampleRowKeys response (#10611)
  • 0e5c5c9 refactor(bigtable): Refactoring client side metrics code (#10623)
  • 47941b3 chore(main): release auth 0.7.3 (#10574)
  • 7cea5ed fix(auth): disable automatic universe domain check for MDS (#10620)
  • 2fef238 feat(parallelstore): add file_stripe_level and directory_stripe_level fields ...
  • b90b361 chore(storage/transfermanager): reduce zero array size used for checksums (#1...
  • 6b51942 docs(datacatalog): mark DataplexTransferStatus.MIGRATED as deprecated (#10621)
  • 97fa560 feat(documentai): A new field imageless_mode is added to message `.google.c...
  • Additional commits viewable in compare view


Updates github.com/aws/aws-sdk-go from 1.55.2 to 1.55.5

Release notes

Sourced from github.com/aws/aws-sdk-go's releases.

Release v1.55.5 (2024-07-30)

Service Client Updates

  • service/appstream: Updates service API and documentation
    • Added support for Red Hat Enterprise Linux 8 on Amazon AppStream 2.0
  • service/autoscaling: Updates service API and documentation
    • Increase the length limit for VPCZoneIdentifier from 2047 to 5000
  • service/codepipeline: Updates service API, documentation, and paginators
    • AWS CodePipeline V2 type pipelines now support stage level conditions to enable development teams to safely release changes that meet quality and compliance requirements.
  • service/elasticache: Updates service documentation
    • Doc only update for changes to deletion API.
  • service/elasticloadbalancing: Updates service API
  • service/eventbridge: Updates service API
  • service/logs: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/models.lex.v2: Updates service API and documentation
  • service/rolesanywhere: Updates service API and documentation
  • service/tnb: Updates service API and documentation
  • service/workspaces: Updates service documentation
    • Removing multi-session as it isn't supported for pools

Release v1.55.4 (2024-07-29)

Service Client Updates

  • service/elasticache: Updates service documentation
    • Renaming full service name as it appears in developer documentation.
  • service/memorydb: Updates service API and documentation

Release v1.55.3 (2024-07-25)

Service Client Updates

  • service/application-autoscaling: Updates service API
  • service/application-signals: Updates service API and documentation
  • service/bedrock-runtime: Updates service API and documentation
  • service/codecommit: Updates service API and documentation
    • CreateRepository API now throws OperationNotAllowedException when the account has been restricted from creating a repository.
  • service/datazone: Updates service API and documentation
  • service/ec2: Updates service API and documentation
    • EC2 Fleet now supports using custom identifiers to reference Amazon Machine Images (AMI) in launch requests that are configured to choose from a diversified list of instance types.
  • service/ecr: Updates service API, documentation, paginators, and examples
    • API and documentation updates for Amazon ECR, adding support for creating, updating, describing and deleting ECR Repository Creation Template.
  • service/eks: Updates service API and documentation
  • service/elasticloadbalancingv2: Updates service API, documentation, and examples
  • service/network-firewall: Updates service API and documentation
  • service/outposts: Updates service API and documentation
  • service/states: Updates service API and documentation
    • This release adds support to customer managed KMS key encryption in AWS Step Functions.

... (truncated)

Commits


Updates github.com/docker/docker from 27.1.1+incompatible to 27.1.2+incompatible

Release notes

Sourced from github.com/docker/docker's releases.

v27.1.2

27.1.2

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

Bug fixes and enhancements

  • Fix a regression that could result in a ResourceExhausted desc = grpc: received message larger than max error when building from a large Dockerfile. moby/moby#48245
  • CLI: Fix docker attach printing a spurious context cancelled error message. docker/cli#5296
  • CLI: Fix docker attach exiting on SIGINT instead of forwarding the signal to the container and waiting for it to exit. docker/cli#5302
  • CLI: Fix --device-read-bps and --device-write-bps options not taking effect. docker/cli#5339
  • CLI: Fix a panic happening in some cases while running a plugin. docker/cli#5337

Packaging updates

Commits
  • f9522e5 Merge pull request #48315 from vvoland/48169-27.x
  • a037b72 Merge pull request #48314 from vvoland/48275-27.x
  • fc0150b daemon/containerd: rm use of regexp
  • 73c01d0 image/v1: rm regexp use
  • c93fe4a layer: rm regexp use
  • 31459c8 docs/api: swagger: fix x-nullable for SystemInfo.Containerd (api v1.46)
  • 35d430c api/swagger: fix x-nullable for SystemInfo.Containerd
  • f5fa090 Merge pull request #48308 from thaJeztah/27.x_backport_migrate_userns
  • a17f5d4 Merge pull request #48294 from austinvazquez/cherry-pick-2b5ffa0b63c76e8bb4eb...
  • 80a59c2 migrate to github.com/moby/sys/userns
  • Additional commits viewable in compare view


Updates github.com/getkin/kin-openapi from 0.126.0 to 0.127.0

Release notes

Sourced from github.com/getkin/kin-openapi's releases.

v0.127.0

What's Changed

New Contributors

Full Changelog: https://github.com/getkin/kin-openapi/compare/v0.126.0...v0.127.0

Commits


Updates github.com/prometheus/client_golang from 1.19.1 to 1.20.1

Release notes

Sourced from github.com/prometheus/client_golang's releases.

v1.20.1

This release contains the critical fix for the issue. Thanks to @​geberl, @​CubicrootXYZ, @​zetaab and @​timofurrer for helping us with the investigation!

  • [BUGFIX] process-collector: Fixed unregistered descriptor error when using process collector with PedanticRegistry on Linux machines. #1587

v1.20.0

Thanks everyone for contributions!

:warning: In this release we remove one (broken anyway, given Go runtime changes) metric and add three new (representing GOGC, GOMEMLIMIT and GOMAXPROCS flags) to the default collectors.NewGoCollector() collector. Given its popular usage, expect your binary to expose two additional metric.

Changes

  • [CHANGE] :warning: go-collector: Remove go_memstat_lookups_total metric which was always 0; Go runtime stopped sharing pointer lookup statistics. #1577
  • [FEATURE] :warning: go-collector: Add 3 default metrics: go_gc_gogc_percent, go_gc_gomemlimit_bytes and go_sched_gomaxprocs_threads as those are recommended by the Go team. #1559
  • [FEATURE] go-collector: Add more information to all metrics' HELP e.g. the exact runtime/metrics sourcing each metric (if relevant). #1568 #1578
  • [FEATURE] testutil: Add CollectAndFormat method. #1503
  • [FEATURE] histograms: Add support for exemplars in native histograms. #1471
  • [FEATURE] promhttp: Add experimental support for zstd on scrape, controlled by the request Accept-Encoding header. #1496
  • [FEATURE] api/v1: Add WithLimit parameter to all API methods that supports it. #1544
  • [FEATURE] prometheus: Add support for created timestamps in constant histograms and constant summaries. #1537
  • [FEATURE] process-collectors: Add network usage metrics: process_network_receive_bytes_total and process_network_transmit_bytes_total. #1555
  • [FEATURE] promlint: Add duplicated metric lint rule. #1472
  • [BUGFIX] promlint: Relax metric type in name linter rule. #1455
  • [BUGFIX] promhttp: Make sure server instrumentation wrapping supports new and future extra responseWriter methods. #1480
  • [BUGFIX] testutil: Functions using compareMetricFamilies are now failing if filtered metricNames are not in the input. #1424

... (truncated)

Changelog

Sourced from github.com/prometheus/client_golang's changelog.

1.20.1 / 2024-08-20

  • [BUGFIX] process-collector: Fixed unregistered descriptor error when using process collector with PedanticRegistry on linux machines. #1587

1.20.0 / 2024-08-14

  • [CHANGE] :warning: go-collector: Remove go_memstat_lookups_total metric which was always 0; Go runtime stopped sharing pointer lookup statistics. #1577
  • [FEATURE] :warning: go-collector: Add 3 default metrics: go_gc_gogc_percent, go_gc_gomemlimit_bytes and go_sched_gomaxprocs_threads as those are recommended by the Go team. #1559
  • [FEATURE] go-collector: Add more information to all metrics' HELP e.g. the exact runtime/metrics sourcing each metric (if relevant). #1568 #1578
  • [FEATURE] testutil: Add CollectAndFormat method. #1503
  • [FEATURE] histograms: Add support for exemplars in native histograms. #1471
  • [FEATURE] promhttp: Add experimental support for zstd on scrape, controlled by the request Accept-Encoding header. #1496
  • [FEATURE] api/v1: Add WithLimit parameter to all API methods that supports it. #1544
  • [FEATURE] prometheus: Add support for created timestamps in constant histograms and constant summaries. #1537
  • [FEATURE] process-collector: Add network usage metrics: process_network_receive_bytes_total and process_network_transmit_bytes_total. #1555
  • [FEATURE] promlint: Add duplicated metric lint rule. #1472
  • [BUGFIX] promlint: Relax metric type in name linter rule. #1455
  • [BUGFIX] promhttp: Make sure server instrumentation wrapping supports new and future extra responseWriter methods. #1480
  • [BUGFIX] testutil: Functions using compareMetricFamilies are now failing if filtered metricNames are not in the input. #1424

1.19.0 / 2024-02-27

The module prometheus/common v0.48.0 introduced an incompatibility when used together with client_golang (See prometheus/client_golang#1448 for more details). If your project uses client_golang and you want to use prometheus/common v0.48.0 or higher, please update client_golang to v1.19.0.

  • [CHANGE] Minimum required go version is now 1.20 (we also test client_golang against new 1.22 version). #1445 #1449
  • [FEATURE] collectors: Add version collector. #1422 #1427

1.18.0 / 2023-12-22

  • [FEATURE] promlint: Allow creation of custom metric validations. #1311
  • [FEATURE] Go programs using client_golang can be built in wasip1 OS. #1350
  • [BUGFIX] histograms: Add timer to reset ASAP after bucket limiting has happened. #1367
  • [BUGFIX] testutil: Fix comparison of metrics with empty Help strings. #1378
  • [ENHANCEMENT] Improved performance of MetricVec.WithLabelValues(...). #1360

1.17.0 / 2023-09-27

  • [CHANGE] Minimum required go version is now 1.19 (we also test client_golang against new 1.21 version). #1325
  • [FEATURE] Add support for Created Timestamps in Counters, Summaries and Historams. #1313
  • [ENHANCEMENT] Enable detection of a native histogram without observations. #1314

1.16.0 / 2023-06-15

  • [BUGFIX] api: Switch to POST for LabelNames, Series, and QueryExemplars. #1252
  • [BUGFIX] api: Fix undefined execution order in return statements. #1260
  • [BUGFIX] native histograms: Fix bug in bucket key calculation. #1279
  • [ENHANCEMENT] Reduce constrainLabels allocations for all metrics. #1272
  • [ENHANCEMENT] promhttp: Add process start time header for scrape efficiency. #1278
  • [ENHANCEMENT] promlint: Improve metricUnits runtime. #1286

... (truncated)

Commits
  • 2254d6c Merge pull request #1587 from prometheus/fix-processcollector
  • 4a15d05 Cut 1.20.1
  • f2dd7b3 Use pedantic registry in other places too, to double check.
  • 261fe84 bugfix: Pass network metrics to processCollector's Describe() function
  • 5bf3341 Use NewPedanticRegistry in Process' Collector tests
  • 73b811c Cut 1.20.0 release. (#1580)
  • 7ce5089 gocollector: Attach original runtime/metrics metric name to help. (#1578)
  • 062300e Remove go_memstat_lookups_total; added runtime/metrics calculation to memstat...
  • aa3c00d Update common Prometheus files (#1576)
  • 3ad2722 Add default Go runtime metrics for /gc/gogc:percent, /gc/gomemlimit:bytes, /s...
  • Additional commits viewable in compare view


Updates go.mongodb.org/mongo-driver from 1.16.0 to 1.16.1

Release notes

Sourced from go.mongodb.org/mongo-driver's releases.

MongoDB Go Driver 1.16.1

The MongoDB Go Driver Team is pleased to release version 1.16.1 of the official Go driver.

Release Notes

This release fixes a bug where excessive heartbeat checks would be emitted in polling mode.

For a full list of tickets included in this release, please see the links below:

Full Changelog: v1.16.0...v1.16.1

Documentation for the Go driver can be found on pkg.go.dev and the MongoDB documentation site. BSON library documentation is also available on pkg.go.dev. Questions and inquiries can be asked on the MongoDB Developer Community. Bugs can be reported in the Go Driver project in the MongoDB JIRA where a list of current issues can be found. Your feedback on the Go driver is greatly appreciated!

Commits
  • 9ea6d8e BUMP v1.16.1
  • c8fb3ec GODRIVER-3255 [release/1.16] Await heartbeat checks upto freq when polling (#...
  • 6ac5ab9 GODRIVER-3292 [release/1.16] Pass context to custom mtest monitor (#1736)
  • 9d8f187 update silk asset group
  • See full diff in compare view


Updates golang.org/x/crypto from 0.25.0 to 0.26.0

Commits
  • 5bcd010 go.mod: update golang.org/x dependencies
  • 3375612 ssh: add support for unpadded RSA signatures
  • bb80217 ssh: don't use dsa keys in integration tests
  • 6879722 ssh: remove go 1.21+ dependency on slices
  • e983fa2 sha3: Avo port of keccakf_amd64.s
  • 80fd972 LICENSE: update per Google Legal
  • f2bc3a6 x509roots/fallback/internal/goissue52287: delete
  • d66d9c3 x509roots/fallback: update bundle
  • See full diff in compare view


Updates golang.org/x/net from 0.27.0 to 0.28.0

Commits
  • 4542a42 go.mod: update golang.org/x dependencies
  • 765c7e8 xsrftoken: create no padding base64 string by RawURLEncoding
  • 032e4e4 LICENSE: update per Google Legal
  • See full diff in compare view


Updates golang.org/x/oauth2 from 0.21.0 to 0.22.0

Commits


Updates golang.org/x/time from 0.5.0 to 0.6.0

Commits


Updates google.golang.org/api from 0.189.0 to 0.193.0

Release notes

Sourced from google.golang.org/api's releases.

v0.193.0

0.193.0 (2024-08-20)

Features

v0.192.0

0.192.0 (2024-08-13)

Features

Bug Fixes

  • internal/cba: Update credsNewAuth path to use nil oauth2 client (#2731) (b457582)

v0.191.0

0.191.0 (2024-08-07)

Features

Bug Fixes

  • Reference gax import in storage libs (#2720) (fffff7f)
  • transport: Disable automatic universe domain check (#2717) (f5b0bb5)

v0.190.0

0.190.0 (2024-08-01)

... (truncated)

Changelog

Sourced from google.golang.org/api's changelog.

0.193.0 (2024-08-20)

Features

netlify[bot] commented 1 month ago

Deploy Preview for ohsu-comp-bio-funnel canceled.

Name Link
Latest commit 5950609a9be49a6651e6091c1c5764c3c93d27fd
Latest deploy log https://app.netlify.com/sites/ohsu-comp-bio-funnel/deploys/66c71b9baf32b400084e4979
dependabot[bot] commented 1 month ago

Looks like these dependencies are updatable in another way, so this is no longer needed.