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ohsu-comp-bio / funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.
https://ohsu-comp-bio.github.io/funnel
MIT License
121 stars 32 forks source link

build(deps): bump the dependabot group across 1 directory with 19 updates #1047

Closed dependabot[bot] closed 1 month ago

dependabot[bot] commented 1 month ago

Bumps the dependabot group with 12 updates in the / directory:

Package From To
cloud.google.com/go/datastore 1.17.1 1.19.0
github.com/aws/aws-sdk-go 1.55.2 1.55.5
github.com/docker/docker 27.1.1+incompatible 27.2.1+incompatible
github.com/getkin/kin-openapi 0.126.0 0.127.0
github.com/prometheus/client_golang 1.19.1 1.20.3
github.com/prometheus/common 0.55.0 0.59.1
github.com/rs/xid 1.5.0 1.6.0
go.mongodb.org/mongo-driver 1.16.0 1.16.1
google.golang.org/grpc 1.65.0 1.66.0
k8s.io/apimachinery 0.31.0-beta.0 0.32.0-alpha.0
k8s.io/client-go 0.31.0-beta.0 0.32.0-alpha.0
github.com/grpc-ecosystem/grpc-gateway/v2 2.20.0 2.22.0

Updates cloud.google.com/go/datastore from 1.17.1 to 1.19.0

Release notes

Sourced from cloud.google.com/go/datastore's releases.

kms: v1.19.0

1.19.0 (2024-08-20)

Features

  • kms: Add support for Go 1.23 iterators (84461c0)

datastore: v1.19.0

1.19.0 (2024-08-22)

Features

retail: v1.18.0

1.18.0 (2024-08-20)

Features

  • retail: Add support for Go 1.23 iterators (84461c0)

security: v1.18.0

1.18.0 (2024-08-20)

Features

  • security: Add support for Go 1.23 iterators (84461c0)

datastore: v1.18.0

1.18.0 (2024-08-21)

Features

  • datastore: Add support for Go 1.23 iterators (84461c0)
  • datastore: Start generating datastorepb protos (946a5fc)

Bug Fixes

  • datastore: Bump google.golang.org/api@v0.187.0 (8fa9e39)
  • datastore: Bump google.golang.org/grpc@v1.64.1 (8ecc4e9)
  • datastore: Ignore field mismatch errors (#8694) (6625d12)
  • datastore: Update dependencies (257c40b)
  • datastore: Update google.golang.org/api to v0.191.0 (5b32644)
Changelog

Sourced from cloud.google.com/go/datastore's changelog.

1.19.0 (2023-05-30)

Features

  • documentai: Update all direct dependencies (b340d03)

1.18.1 (2023-05-08)

Bug Fixes

  • documentai: Update grpc to v1.55.0 (1147ce0)

1.18.0 (2023-03-22)

Features

  • documentai: Add ImportProcessorVersion in v1beta3 (c967961)

1.17.0 (2023-03-15)

Features

  • documentai: Added hints.language_hints field in OcrConfig (#7522) (b2c40c3)

1.16.0 (2023-02-22)

Features

1.15.0 (2023-02-14)

⚠ BREAKING CHANGES

  • documentai: The TrainProcessorVersion parent was incorrectly annotated.

Features

  • documentai: Add REST client (06a54a1)
  • documentai: Added advanced_ocr_options field in OcrConfig (45c70e3)
  • documentai: Added EvaluationReference to evaluation.proto (#7290) (4623db8)
  • documentai: Added field_mask field in DocumentOutputConfig.GcsOutputConfig in document_io.proto (2a0b1ae)
  • documentai: Added font_family to document.proto feat: added ImageQualityScores message to document.proto feat: added PropertyMetadata and EntityTypeMetadata to document_schema.proto (9c5d6c8)
  • documentai: Added TrainProcessorVersion, EvaluateProcessorVersion, GetEvaluation, and ListEvaluations v1beta3 APIs feat: added evaluation.proto feat: added document_schema field in ProcessorVersion processor.proto feat: added image_quality_scores field in Document.Page in document.proto feat: added font_family field in Document.Style in document.proto (ac0c5c2)

... (truncated)

Commits


Updates cloud.google.com/go/pubsub from 1.40.0 to 1.42.0

Commits


Updates github.com/aws/aws-sdk-go from 1.55.2 to 1.55.5

Release notes

Sourced from github.com/aws/aws-sdk-go's releases.

Release v1.55.5 (2024-07-30)

Service Client Updates

  • service/appstream: Updates service API and documentation
    • Added support for Red Hat Enterprise Linux 8 on Amazon AppStream 2.0
  • service/autoscaling: Updates service API and documentation
    • Increase the length limit for VPCZoneIdentifier from 2047 to 5000
  • service/codepipeline: Updates service API, documentation, and paginators
    • AWS CodePipeline V2 type pipelines now support stage level conditions to enable development teams to safely release changes that meet quality and compliance requirements.
  • service/elasticache: Updates service documentation
    • Doc only update for changes to deletion API.
  • service/elasticloadbalancing: Updates service API
  • service/eventbridge: Updates service API
  • service/logs: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/models.lex.v2: Updates service API and documentation
  • service/rolesanywhere: Updates service API and documentation
  • service/tnb: Updates service API and documentation
  • service/workspaces: Updates service documentation
    • Removing multi-session as it isn't supported for pools

Release v1.55.4 (2024-07-29)

Service Client Updates

  • service/elasticache: Updates service documentation
    • Renaming full service name as it appears in developer documentation.
  • service/memorydb: Updates service API and documentation

Release v1.55.3 (2024-07-25)

Service Client Updates

  • service/application-autoscaling: Updates service API
  • service/application-signals: Updates service API and documentation
  • service/bedrock-runtime: Updates service API and documentation
  • service/codecommit: Updates service API and documentation
    • CreateRepository API now throws OperationNotAllowedException when the account has been restricted from creating a repository.
  • service/datazone: Updates service API and documentation
  • service/ec2: Updates service API and documentation
    • EC2 Fleet now supports using custom identifiers to reference Amazon Machine Images (AMI) in launch requests that are configured to choose from a diversified list of instance types.
  • service/ecr: Updates service API, documentation, paginators, and examples
    • API and documentation updates for Amazon ECR, adding support for creating, updating, describing and deleting ECR Repository Creation Template.
  • service/eks: Updates service API and documentation
  • service/elasticloadbalancingv2: Updates service API, documentation, and examples
  • service/network-firewall: Updates service API and documentation
  • service/outposts: Updates service API and documentation
  • service/states: Updates service API and documentation
    • This release adds support to customer managed KMS key encryption in AWS Step Functions.

... (truncated)

Commits


Updates github.com/docker/docker from 27.1.1+incompatible to 27.2.1+incompatible

Release notes

Sourced from github.com/docker/docker's releases.

v27.2.1

27.2.1

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

Bug fixes and enhancements

  • containerd image store: Fix non-container images being hidden in the docker images output. moby/moby#48402
  • containerd image store: Improve docker pull error message when the image platform doesn't match. moby/moby#48415
  • CLI: Fix issue causing login to not remove repository names from passed in registry addresses, resulting in credentials being stored under the wrong key. docker/cli#5385
  • CLI: Fix issue that will sometimes cause the browser-login flow to fail if the CLI process is suspended and then resumed while waiting for the user to authenticate. docker/cli#5376
  • CLI: docker login now returns an error instead of hanging if called non-interactively with --password or --password-stdin but without --user. docker/cli#5402

Packaging updates

v27.2.0

27.2.0

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

New

  • CLI: Add support for device-code flow login when authenticating to the official registry. docker/cli#5349
  • containerd image store: docker image ls now supports --tree flag that shows a multiplatform-aware image list. This is experimental and may change at any time without any backwards compatibility. docker/cli#5353

API

  • GET /images/json response now includes Manifests field, which contains information about the sub-manifests included in the image index. This includes things like platform-specific manifests and build attestations. The new field will only be populated if the request also sets the manifests query parameter to true.

[!WARNING]

This is experimental and may change at any time without any backward compatibility.

Bug fixes and enhancements

  • CLI: Fix issue with remote contexts over SSH where the CLI would allocate a pseudoterminal when connecting to the remote host, which causes issues in rare situations. docker/cli#5351
  • Fix an issue that prevented network creation with a --ip-range ending on a 64-bit boundary. moby/moby#48326

... (truncated)

Commits
  • 8b539b8 Merge pull request #48433 from vvoland/48432-27.x
  • 37bf6e8 update to go1.22.7
  • fefdb1b Merge pull request #48430 from vvoland/48425-27.x
  • 3a4c589 vendor: github.com/opencontainers/runc v1.1.14
  • 6eeb414 Merge pull request #48426 from thaJeztah/27.x_backport_bump_runc_1.1.14
  • 54af846 Merge pull request #48416 from thaJeztah/27.x_backport_update_go_1.22
  • 10cf2d6 update runc binary to 1.1.14
  • 7b86f40 Merge pull request #48423 from vvoland/48422-27.x
  • 84cfcb0 docs/api: add documentation for API v1.47
  • edeb6ba golangci-lint: temporarily disable G115: integer overflow conversion
  • Additional commits viewable in compare view


Updates github.com/getkin/kin-openapi from 0.126.0 to 0.127.0

Release notes

Sourced from github.com/getkin/kin-openapi's releases.

v0.127.0

What's Changed

New Contributors

Full Changelog: https://github.com/getkin/kin-openapi/compare/v0.126.0...v0.127.0

Commits


Updates github.com/prometheus/client_golang from 1.19.1 to 1.20.3

Release notes

Sourced from github.com/prometheus/client_golang's releases.

v1.20.3

  • [BUGFIX] histograms: Fix possible data race when appending exemplars. #1608

v1.20.2

  • [BUGFIX] promhttp: Unset Content-Encoding header when data is uncompressed. #1596

v1.20.1

This release contains the critical fix for the issue. Thanks to @​geberl, @​CubicrootXYZ, @​zetaab and @​timofurrer for helping us with the investigation!

  • [BUGFIX] process-collector: Fixed unregistered descriptor error when using process collector with PedanticRegistry on Linux machines. #1587

v1.20.0

Thanks everyone for contributions!

:warning: In this release we remove one (broken anyway, given Go runtime changes) metric and add three new (representing GOGC, GOMEMLIMIT and GOMAXPROCS flags) to the default collectors.NewGoCollector() collector. Given its popular usage, expect your binary to expose two additional metric.

Changes

  • [CHANGE] :warning: go-collector: Remove go_memstat_lookups_total metric which was always 0; Go runtime stopped sharing pointer lookup statistics. #1577
  • [FEATURE] :warning: go-collector: Add 3 default metrics: go_gc_gogc_percent, go_gc_gomemlimit_bytes and go_sched_gomaxprocs_threads as those are recommended by the Go team. #1559
  • [FEATURE] go-collector: Add more information to all metrics' HELP e.g. the exact runtime/metrics sourcing each metric (if relevant). #1568 #1578
  • [FEATURE] testutil: Add CollectAndFormat method. #1503
  • [FEATURE] histograms: Add support for exemplars in native histograms. #1471
  • [FEATURE] promhttp: Add experimental support for zstd on scrape, controlled by the request Accept-Encoding header. #1496
  • [FEATURE] api/v1: Add WithLimit parameter to all API methods that supports it. #1544
  • [FEATURE] prometheus: Add support for created timestamps in constant histograms and constant summaries. #1537
  • [FEATURE] process-collectors: Add network usage metrics: process_network_receive_bytes_total and process_network_transmit_bytes_total. #1555
  • [FEATURE] promlint: Add duplicated metric lint rule. #1472
  • [BUGFIX] promlint: Relax metric type in name linter rule. #1455
  • [BUGFIX] promhttp: Make sure server instrumentation wrapping supports new and future extra responseWriter methods. #1480
  • [BUGFIX] testutil: Functions using compareMetricFamilies are now failing if filtered metricNames are not in the input. #1424

... (truncated)

Changelog

Sourced from github.com/prometheus/client_golang's changelog.

1.20.3 / 2024-09-05

  • [BUGFIX] histograms: Fix possible data race when appending exemplars. #1608

1.20.2 / 2024-08-23

  • [BUGFIX] promhttp: Unset Content-Encoding header when data is uncompressed. #1596

1.20.1 / 2024-08-20

  • [BUGFIX] process-collector: Fixed unregistered descriptor error when using process collector with PedanticRegistry on linux machines. #1587

1.20.0 / 2024-08-14

  • [CHANGE] :warning: go-collector: Remove go_memstat_lookups_total metric which was always 0; Go runtime stopped sharing pointer lookup statistics. #1577
  • [FEATURE] :warning: go-collector: Add 3 default metrics: go_gc_gogc_percent, go_gc_gomemlimit_bytes and go_sched_gomaxprocs_threads as those are recommended by the Go team. #1559
  • [FEATURE] go-collector: Add more information to all metrics' HELP e.g. the exact runtime/metrics sourcing each metric (if relevant). #1568 #1578
  • [FEATURE] testutil: Add CollectAndFormat method. #1503
  • [FEATURE] histograms: Add support for exemplars in native histograms. #1471
  • [FEATURE] promhttp: Add experimental support for zstd on scrape, controlled by the request Accept-Encoding header. #1496
  • [FEATURE] api/v1: Add WithLimit parameter to all API methods that supports it. #1544
  • [FEATURE] prometheus: Add support for created timestamps in constant histograms and constant summaries. #1537
  • [FEATURE] process-collector: Add network usage metrics: process_network_receive_bytes_total and process_network_transmit_bytes_total. #1555
  • [FEATURE] promlint: Add duplicated metric lint rule. #1472
  • [BUGFIX] promlint: Relax metric type in name linter rule. #1455
  • [BUGFIX] promhttp: Make sure server instrumentation wrapping supports new and future extra responseWriter methods. #1480
  • [BUGFIX] testutil: Functions using compareMetricFamilies are now failing if filtered metricNames are not in the input. #1424

1.19.0 / 2024-02-27

The module prometheus/common v0.48.0 introduced an incompatibility when used together with client_golang (See prometheus/client_golang#1448 for more details). If your project uses client_golang and you want to use prometheus/common v0.48.0 or higher, please update client_golang to v1.19.0.

  • [CHANGE] Minimum required go version is now 1.20 (we also test client_golang against new 1.22 version). #1445 #1449
  • [FEATURE] collectors: Add version collector. #1422 #1427

1.18.0 / 2023-12-22

  • [FEATURE] promlint: Allow creation of custom metric validations. #1311
  • [FEATURE] Go programs using client_golang can be built in wasip1 OS. #1350
  • [BUGFIX] histograms: Add timer to reset ASAP after bucket limiting has happened. #1367
  • [BUGFIX] testutil: Fix comparison of metrics with empty Help strings. #1378
  • [ENHANCEMENT] Improved performance of MetricVec.WithLabelValues(...). #1360

1.17.0 / 2023-09-27

  • [CHANGE] Minimum required go version is now 1.19 (we also test client_golang against new 1.21 version). #1325
  • [FEATURE] Add support for Created Timestamps in Counters, Summaries and Historams. #1313
  • [ENHANCEMENT] Enable detection of a native histogram without observations. #1314

1.16.0 / 2023-06-15

... (truncated)

Commits
  • ef2f87e Merge pull request #1620 from prometheus/arthursens/prepare-1.20.3
  • 937ac63 Add changelog entry for 1.20.3
  • 6e9914d Merge pull request #1608 from krajorama/index-out-of-range-native-histogram-e...
  • d6b8c89 Update comments with more explanations
  • 504566f Use simplified solution from #1609 for the data race
  • dc8e9a4 fix: native histogram: Simplify and fix addExemplar
  • dc819ce Use a trivial solution to #1605
  • e061dfa native histogram: use exemplars in concurrency test
  • 67121dc Merge pull request #1596 from mrueg/fix-uncompressed-content-header
  • 187acd4 Cut 1.20.2
  • Additional commits viewable in compare view


Updates github.com/prometheus/common from 0.55.0 to 0.59.1

Release notes

Sourced from github.com/prometheus/common's releases.

v0.59.1

What's Changed

Full Changelog: https://github.com/prometheus/common/compare/v0.59.0...v0.59.1

v0.59.0

What's Changed

Full Changelog: https://github.com/prometheus/common/compare/v0.58.0...v0.59.0

v0.58.0

What's Changed

Full Changelog: https://github.com/prometheus/common/compare/v0.57.0...v0.58.0

v0.57.0

What's Changed

New Contributors

Full Changelog: https://github.com/prometheus/common/compare/v0.56.0...v0.57.0

v0.56.0

What's Changed

... (truncated)

Commits
  • be8a747 fix(utf8): Fix multiple metric name inside braces validation (#691)
  • bf4843e Merge pull request #690 from ywwg/owilliams/default-escaping
  • 01da226 Change the default escape method to UnderscoreEscaping
  • 4f8e8f4 expfmt: Add WithEscapingScheme to help construct Formats (#688)
  • b1880d0 Merge pull request #687 from roidelapluie/checkheader
  • 334963d Change the logic for SetDirectory
  • d64a747 Remove secret file existence check in Validate for headers
  • 06c2425 Bump golang.org/x/net from 0.27.0 to 0.28.0 (#685)
  • 4606c0a Bump golang.org/x/oauth2 from 0.21.0 to 0.22.0 (#684)
  • d98411b Merge pull request #683 from tjhop/docs/promslog-README
  • Additional commits viewable in compare view


Updates github.com/rs/xid from 1.5.0 to 1.6.0

Commits


Updates go.mongodb.org/mongo-driver from 1.16.0 to 1.16.1

Release notes

Sourced from go.mongodb.org/mongo-driver's releases.

MongoDB Go Driver 1.16.1

The MongoDB Go Driver Team is pleased to release version 1.16.1 of the official Go driver.

Release Notes

This release fixes a bug where excessive heartbeat checks would be emitted in polling mode.

For a full list of tickets included in this release, please see the links below:

Full Changelog: v1.16.0...v1.16.1

Documentation for the Go driver can be found on pkg.go.dev and the MongoDB documentation site. BSON library documentation is also available on pkg.go.dev. Questions and inquiries can be asked on the MongoDB Developer Community. Bugs can be reported in the Go Driver project in the MongoDB JIRA where a list of current issues can be found. Your feedback on the Go driver is greatly appreciated!

Commits
  • 9ea6d8e BUMP v1.16.1
  • c8fb3ec GODRIVER-3255 [release/1.16] Await heartbeat checks upto freq when polling (#...
  • 6ac5ab9 GODRIVER-3292 [release/1.16] Pass context to custom mtest monitor (#1736)
  • 9d8f187 update silk asset group
  • See full diff in compare view


Updates golang.org/x/crypto from 0.25.0 to 0.26.0

Commits
dependabot[bot] commented 1 month ago

Superseded by #1048.