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ohsu-comp-bio / funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.
https://ohsu-comp-bio.github.io/funnel
MIT License
121 stars 32 forks source link

build(deps): bump the dependabot group across 1 directory with 22 updates #1061

Closed dependabot[bot] closed 2 weeks ago

dependabot[bot] commented 2 weeks ago

Bumps the dependabot group with 12 updates in the / directory:

Package From To
cloud.google.com/go/datastore 1.16.0 1.19.0
github.com/aws/aws-sdk-go 1.52.3 1.55.5
github.com/docker/docker 26.1.1+incompatible 27.3.1+incompatible
github.com/getkin/kin-openapi 0.124.0 0.127.0
github.com/go-test/deep 1.0.8 1.1.1
github.com/prometheus/client_golang 1.19.0 1.20.4
github.com/rs/xid 1.5.0 1.6.0
github.com/spf13/cobra 1.8.0 1.8.1
go.mongodb.org/mongo-driver 1.15.0 1.17.0
k8s.io/apimachinery 0.31.0-alpha.0 0.32.0-alpha.0
k8s.io/client-go 0.31.0-alpha.0 0.32.0-alpha.0
github.com/grpc-ecosystem/grpc-gateway/v2 2.19.1 2.22.0

Updates cloud.google.com/go/datastore from 1.16.0 to 1.19.0

Release notes

Sourced from cloud.google.com/go/datastore's releases.

dlp: v1.19.0

1.19.0 (2024-09-19)

Features

  • dlp: Action for publishing data profiles to SecOps (formelly known as Chronicle) (#10884) (fdb4ea9)
  • dlp: Action for publishing data profiles to Security Command Center (fdb4ea9)
  • dlp: Discovery configs for AWS S3 buckets (fdb4ea9)

Documentation

  • dlp: Small improvements and clarifications (fdb4ea9)

retail: v1.18.1

1.18.1 (2024-09-12)

Bug Fixes

  • retail: Bump dependencies (2ddeb15)

security: v1.18.1

1.18.1 (2024-09-12)

Bug Fixes

  • security: Bump dependencies (2ddeb15)

redis: v1.17.1

1.17.1 (2024-09-12)

Bug Fixes

  • redis: Bump dependencies (2ddeb15)
Changelog

Sourced from cloud.google.com/go/datastore's changelog.

1.19.0 (2023-05-30)

Features

  • documentai: Update all direct dependencies (b340d03)

1.18.1 (2023-05-08)

Bug Fixes

  • documentai: Update grpc to v1.55.0 (1147ce0)

1.18.0 (2023-03-22)

Features

  • documentai: Add ImportProcessorVersion in v1beta3 (c967961)

1.17.0 (2023-03-15)

Features

  • documentai: Added hints.language_hints field in OcrConfig (#7522) (b2c40c3)
Commits


Updates cloud.google.com/go/pubsub from 1.37.0 to 1.42.0

Commits


Updates github.com/aws/aws-sdk-go from 1.52.3 to 1.55.5

Release notes

Sourced from github.com/aws/aws-sdk-go's releases.

Release v1.55.5 (2024-07-30)

Service Client Updates

  • service/appstream: Updates service API and documentation
    • Added support for Red Hat Enterprise Linux 8 on Amazon AppStream 2.0
  • service/autoscaling: Updates service API and documentation
    • Increase the length limit for VPCZoneIdentifier from 2047 to 5000
  • service/codepipeline: Updates service API, documentation, and paginators
    • AWS CodePipeline V2 type pipelines now support stage level conditions to enable development teams to safely release changes that meet quality and compliance requirements.
  • service/elasticache: Updates service documentation
    • Doc only update for changes to deletion API.
  • service/elasticloadbalancing: Updates service API
  • service/eventbridge: Updates service API
  • service/logs: Updates service API
    • Add v2 smoke tests and smithy smokeTests trait for SDK testing.
  • service/models.lex.v2: Updates service API and documentation
  • service/rolesanywhere: Updates service API and documentation
  • service/tnb: Updates service API and documentation
  • service/workspaces: Updates service documentation
    • Removing multi-session as it isn't supported for pools

Release v1.55.4 (2024-07-29)

Service Client Updates

  • service/elasticache: Updates service documentation
    • Renaming full service name as it appears in developer documentation.
  • service/memorydb: Updates service API and documentation

Release v1.55.3 (2024-07-25)

Service Client Updates

  • service/application-autoscaling: Updates service API
  • service/application-signals: Updates service API and documentation
  • service/bedrock-runtime: Updates service API and documentation
  • service/codecommit: Updates service API and documentation
    • CreateRepository API now throws OperationNotAllowedException when the account has been restricted from creating a repository.
  • service/datazone: Updates service API and documentation
  • service/ec2: Updates service API and documentation
    • EC2 Fleet now supports using custom identifiers to reference Amazon Machine Images (AMI) in launch requests that are configured to choose from a diversified list of instance types.
  • service/ecr: Updates service API, documentation, paginators, and examples
    • API and documentation updates for Amazon ECR, adding support for creating, updating, describing and deleting ECR Repository Creation Template.
  • service/eks: Updates service API and documentation
  • service/elasticloadbalancingv2: Updates service API, documentation, and examples
  • service/network-firewall: Updates service API and documentation
  • service/outposts: Updates service API and documentation
  • service/states: Updates service API and documentation
    • This release adds support to customer managed KMS key encryption in AWS Step Functions.

... (truncated)

Commits


Updates github.com/docker/docker from 26.1.1+incompatible to 27.3.1+incompatible

Release notes

Sourced from github.com/docker/docker's releases.

v27.3.1

27.3.1

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

Bug fixes and enhancements

  • CLI: Fix issue with command execution metrics not being exported due to the CLI MeterProvider being shutdown too early. docker/cli#5457

Packaging updates

v27.3.0

27.3.0

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

Bug fixes and enhancements

  • containerd image store: Fix docker image prune -a untagging images used by containers started from images referenced by a digested reference. moby/moby#48488
  • Add a --feature flag to the daemon options. moby/moby#48487
  • Updated the handling of the --gpus=0 flag to be consistent with the NVIDIA Container Runtime. moby/moby#48483 (docker/cli#5432)
  • Support WSL2 mirrored-mode networking's use of interface loopback0 for packets from the Windows host. moby/moby#48514
  • Fix an issue that prevented communication between containers on an IPv4 bridge network when running with --iptables=false, --ip6tables=true (the default), a firewall with a DROP rule for forwarded packets on hosts where the br_netfilter kernel module was not normally loaded. moby/moby#48511
  • CLI: Fix issue where docker volume update command would cause the CLI to panic if no argument/volume was passed. docker/cli#5426
  • docker/cli#5432

Packaging updates

v27.3.0-rc.2

27.3.0-rc.2

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

... (truncated)

Commits
  • 41ca978 Merge pull request #48525 from thaJeztah/27.x_backport_govulncheck_permissions
  • a6b772b gha: govulncheck: make sure read permissions are set
  • 856359c Merge pull request #48514 from robmry/backport-27.x/wsl2_mirrored_loopback0_w...
  • cd21af7 Do not DNAT packets from WSL2's loopback0
  • 8516f3b Merge pull request #48510 from thaJeztah/27.x_backport_bump_buildx_compose
  • 3a7779a Merge pull request #48511 from robmry/backport-27.x/48375_bridge_netfiltering
  • 5c499fc Only enable bridge netfiltering when needed
  • 98f24aa Merge pull request #48506 from thaJeztah/27.x_backport_man_dockerd_logformat
  • 8adc8e4 Dockerfile: update compose to v2.29.4
  • 576fc88 Dockerfile: update buildx to v0.17.1
  • Additional commits viewable in compare view


Updates github.com/getkin/kin-openapi from 0.124.0 to 0.127.0

Release notes

Sourced from github.com/getkin/kin-openapi's releases.

v0.127.0

What's Changed

New Contributors

Full Changelog: https://github.com/getkin/kin-openapi/compare/v0.126.0...v0.127.0

v0.126.0

What's Changed

New Contributors

Full Changelog: https://github.com/getkin/kin-openapi/compare/v0.125.0...v0.126.0

v0.125.0

What's Changed

... (truncated)

Commits


Updates github.com/go-test/deep from 1.0.8 to 1.1.1

Release notes

Sourced from github.com/go-test/deep's releases.

v1.1.1

What's Changed

New Contributors

Full Changelog: https://github.com/go-test/deep/compare/v1.1.0...v1.1.1

v1.1.0

New minor release, v1.1, that adds support for optional flags.

What's Changed

Full Changelog: https://github.com/go-test/deep/compare/v1.0.9...v1.1.0

v1.0.9

What's Changed

Full Changelog: https://github.com/go-test/deep/compare/v1.0.8...v1.0.9

Changelog

Sourced from github.com/go-test/deep's changelog.

v1.1.1 released 2024-06-23

  • Added NilPointersAreZero option: causes a nil pointer to be equal to a zero value (PR #61) (@​seveas)
  • Updated test matrix to go1.22, go1.21, and go1.20

v1.1.0 released 2022-12-09

  • Add optional flags: Equal(a, b, flags..) and FLAG_IGNORE_SLICE_ORDER (issue #28, PR #56) (@​alenkacz)

v1.0.9 released 2022-12-09

  • Fixed issue #45: Panic when comparing errors in unexported fields (PR #54) (@​seveas)
  • Fixed issue #46: Functions are handled differently from reflect.DeepEqual (PR #55) (@​countcb)
  • Updated test matrix to go1.17, go1.18, and go1.19 and moved testing to GitHub Actions
Commits
  • 9e863ff Release v1.1.1
  • dc5b2f6 Update SECURITY.md
  • 185886d Restore 100% test coverage (NilPointersAreZero case)
  • 47ae1b8 Merge pull request #61 from seveas/nil-pointers-are-zero
  • 93c35ac Merge branch 'master' into nil-pointers-are-zero
  • 2982c5c Update test matrix to latest 3 Go versions
  • 2b8252e Add an option to consider nil pointers to be equivalent to zero values
  • 95fb3b1 Merge pull request #58 from bartleyg/patch-1
  • 1127c84 fix copy pasta test
  • 7ff4e92 Update changelog for v1.1.0
  • Additional commits viewable in compare view


Updates github.com/prometheus/client_golang from 1.19.0 to 1.20.4

Release notes

Sourced from github.com/prometheus/client_golang's releases.

v1.20.4

  • [BUGFIX] histograms: Fix a possible data race when appending exemplars vs metrics gather. #1623

v1.20.3

  • [BUGFIX] histograms: Fix possible data race when appending exemplars. #1608

v1.20.2

  • [BUGFIX] promhttp: Unset Content-Encoding header when data is uncompressed. #1596

v1.20.1

This release contains the critical fix for the issue. Thanks to @​geberl, @​CubicrootXYZ, @​zetaab and @​timofurrer for helping us with the investigation!

  • [BUGFIX] process-collector: Fixed unregistered descriptor error when using process collector with PedanticRegistry on Linux machines. #1587

v1.20.0

Thanks everyone for contributions!

:warning: In this release we remove one (broken anyway, given Go runtime changes) metric and add three new (representing GOGC, GOMEMLIMIT and GOMAXPROCS flags) to the default collectors.NewGoCollector() collector. Given its popular usage, expect your binary to expose two additional metric.

Changes

  • [CHANGE] :warning: go-collector: Remove go_memstat_lookups_total metric which was always 0; Go runtime stopped sharing pointer lookup statistics. #1577
  • [FEATURE] :warning: go-collector: Add 3 default metrics: go_gc_gogc_percent, go_gc_gomemlimit_bytes and go_sched_gomaxprocs_threads as those are recommended by the Go team. #1559
  • [FEATURE] go-collector: Add more information to all metrics' HELP e.g. the exact runtime/metrics sourcing each metric (if relevant). #1568 #1578
  • [FEATURE] testutil: Add CollectAndFormat method. #1503
  • [FEATURE] histograms: Add support for exemplars in native histograms. #1471
  • [FEATURE] promhttp: Add experimental support for zstd on scrape, controlled by the request Accept-Encoding header. #1496
  • [FEATURE] api/v1: Add WithLimit parameter to all API methods that supports it. #1544
  • [FEATURE] prometheus: Add support for created timestamps in constant histograms and constant summaries. #1537
  • [FEATURE] process-collectors: Add network usage metrics: process_network_receive_bytes_total and process_network_transmit_bytes_total. #1555
  • [FEATURE] promlint: Add duplicated metric lint rule. #1472
  • [BUGFIX] promlint: Relax metric type in name linter rule. #1455
  • [BUGFIX] promhttp: Make sure server instrumentation wrapping supports new and future extra responseWriter methods. #1480
  • [BUGFIX] testutil: Functions using compareMetricFamilies are now failing if filtered metricNames are not in the input. #1424

... (truncated)

Changelog

Sourced from github.com/prometheus/client_golang's changelog.

Unreleased

  • [BUGFIX] histograms: Fix possible data race when appending exemplars vs metrics gather. #1623

1.20.3 / 2024-09-05

  • [BUGFIX] histograms: Fix possible data race when appending exemplars. #1608

1.20.2 / 2024-08-23

  • [BUGFIX] promhttp: Unset Content-Encoding header when data is uncompressed. #1596

1.20.1 / 2024-08-20

  • [BUGFIX] process-collector: Fixed unregistered descriptor error when using process collector with PedanticRegistry on linux machines. #1587

1.20.0 / 2024-08-14

  • [CHANGE] :warning: go-collector: Remove go_memstat_lookups_total metric which was always 0; Go runtime stopped sharing pointer lookup statistics. #1577
  • [FEATURE] :warning: go-collector: Add 3 default metrics: go_gc_gogc_percent, go_gc_gomemlimit_bytes and go_sched_gomaxprocs_threads as those are recommended by the Go team. #1559
  • [FEATURE] go-collector: Add more information to all metrics' HELP e.g. the exact runtime/metrics sourcing each metric (if relevant). #1568 #1578
  • [FEATURE] testutil: Add CollectAndFormat method. #1503
  • [FEATURE] histograms: Add support for exemplars in native histograms. #1471
  • [FEATURE] promhttp: Add experimental support for zstd on scrape, controlled by the request Accept-Encoding header. #1496
  • [FEATURE] api/v1: Add WithLimit parameter to all API methods that supports it. #1544
  • [FEATURE] prometheus: Add support for created timestamps in constant histograms and constant summaries. #1537
  • [FEATURE] process-collector: Add network usage metrics: process_network_receive_bytes_total and process_network_transmit_bytes_total. #1555
  • [FEATURE] promlint: Add duplicated metric lint rule. #1472
  • [BUGFIX] promlint: Relax metric type in name linter rule. #1455
  • [BUGFIX] promhttp: Make sure server instrumentation wrapping supports new and future extra responseWriter methods. #1480
  • [BUGFIX] testutil: Functions using compareMetricFamilies are now failing if filtered metricNames are not in the input. #1424
Commits
  • 05fcde9 Merge pull request #1623 from krajorama/data-race-in-histogram-write
  • 209f4c0 Add changelog
  • 1e398cc native histogram: Fix race between Write and addExemplar
  • ef2f87e Merge pull request #1620 from prometheus/arthursens/prepare-1.20.3
  • 937ac63 Add changelog entry for 1.20.3
  • 6e9914d Merge pull request #1608 from krajorama/index-out-of-range-native-histogram-e...
  • d6b8c89 Update comments with more explanations
  • 504566f Use simplified solution from #1609 for the data race
  • dc8e9a4 fix: native histogram: Simplify and fix addExemplar
  • dc819ce Use a trivial solution to #1605
  • Additional commits viewable in compare view


Updates github.com/prometheus/common from 0.53.0 to 0.55.0

Release notes

Sourced from github.com/prometheus/common's releases.

v0.55.0

What's Changed

New Contributors

Full Changelog: https://github.com/prometheus/common/compare/v0.54.0...v0.55.0

v0.54.0

What's Changed

New Contributors

Full Changelog: https://github.com/prometheus/common/compare/v0.53.0...v0.54.0

Commits