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ohsu-comp-bio / funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.
https://ohsu-comp-bio.github.io/funnel
MIT License
121 stars 32 forks source link

build(deps): bump the dependabot group across 1 directory with 19 updates #991

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 4 months ago

Bumps the dependabot group with 13 updates in the / directory:

Package From To
cloud.google.com/go/datastore 1.16.0 1.17.1
github.com/aws/aws-sdk-go 1.52.3 1.54.1
github.com/docker/docker 26.1.1+incompatible 27.0.0+incompatible
github.com/getkin/kin-openapi 0.124.0 0.125.0
github.com/go-test/deep 1.0.8 1.1.0
github.com/prometheus/client_golang 1.19.0 1.19.1
github.com/prometheus/common 0.53.0 0.54.0
golang.org/x/crypto 0.23.0 0.24.0
golang.org/x/net 0.25.0 0.26.0
k8s.io/api 0.31.0-alpha.0 0.31.0-alpha.1
k8s.io/client-go 0.31.0-alpha.0 0.31.0-alpha.1
github.com/grpc-ecosystem/grpc-gateway/v2 2.19.1 2.20.0
google.golang.org/protobuf 1.34.1 1.34.2

Updates cloud.google.com/go/datastore from 1.16.0 to 1.17.1

Release notes

Sourced from cloud.google.com/go/datastore's releases.

kms: v1.17.1

1.17.1 (2024-05-22)

Bug Fixes

datastore: v1.17.1

1.17.1 (2024-06-10)

Bug Fixes

  • datastore: Regenerate protos in new namespace (#10158) (8875511), refs #10155
  • datastore: Update retry transaction logic to be inline with Spanner (#10349) (5929a6e)

datastore: v1.17.0

1.17.0 (2024-05-08)

Features

kms: v1.17.0

1.17.0 (2024-05-16)

Features

  • kms: Add client library for KMS Autokey service, which enables automated KMS key provision and management (292e812)

security: v1.17.0

1.17.0 (2024-05-22)

Features

retail: v1.17.0

1.17.0 (2024-06-10)

Features

  • retail: Add branch and project APIs to alpha (4c102b7)
  • retail: Add page_categories to control condition (4c102b7)
  • retail: Add product purge API (4c102b7)

... (truncated)

Changelog

Sourced from cloud.google.com/go/datastore's changelog.

Changes

1.30.0 (2024-06-05)

Features

  • documentai: Make Layout Parser generally available in V1 (#10286) (92dc381)

1.29.0 (2024-05-29)

Features

  • documentai: Make Layout Parser generally available in V1 (#10277) (dafecc9)

1.28.1 (2024-05-16)

Documentation

  • documentai: Clarify the unavailability of some features (652ba8f)
  • documentai: Updated comments (292e812)

1.28.0 (2024-05-01)

Features

  • documentai: A new message FoundationModelTuningOptions is added (1d757c6)
  • documentai: Support Chunk header and footer in Doc AI external proto (1d757c6)

Bug Fixes

  • documentai: Bump x/net to v0.24.0 (ba31ed5)

1.27.0 (2024-04-15)

Features

  • documentai: Support a new Layout Processor in Document AI (2cdc40a)

1.26.1 (2024-03-14)

Bug Fixes

... (truncated)

Commits


Updates cloud.google.com/go/pubsub from 1.37.0 to 1.38.0

Release notes

Sourced from cloud.google.com/go/pubsub's releases.

pubsub: v1.38.0

1.38.0 (2024-05-06)

Features

  • pubsub: Add custom datetime format for Cloud Storage subscriptions (4834425)
  • pubsub: Support publisher compression (#9711) (4940c3c)
  • pubsub: Use Streaming Pull response for ordering check (#9682) (7bf4904)

Bug Fixes

  • pubsub: Bump x/net to v0.24.0 (ba31ed5)
  • pubsub: Respect gRPC dial option when PUBSUB_EMULATOR_HOST is set (#10040) (95bf6b2)
  • pubsub: Update protobuf dep to v1.33.0 (30b038d)
Commits
  • aaf7fa2 chore(main): release pubsub 1.38.0 (#9589)
  • 95bf6b2 fix(pubsub): respect gRPC dial option when PUBSUB_EMULATOR_HOST is set (#10040)
  • 0183dd5 chore(main): release vertexai 0.8.0 (#9535)
  • c07f1e4 fix(spanner): update staleness bound (#10118)
  • b91f658 test(spanner): fix retry unit tests with RESOURCE_EXHAUSTED errors (#10117)
  • b9b55e0 chore(thirdparty): remove json-iterator exemption (#10113)
  • fafaf0d fix(internal/aliasfix): handle import paths correctly (#10097)
  • 63f947d chore(spanner): use time.Since instead of time.Now().Sub (#10096)
  • a4a8fbc docs: update copyright year in Fleet Engine (#10090)
  • 9013e52 feat(auth): Enable client certificates by default (#10102)
  • Additional commits viewable in compare view


Updates github.com/aws/aws-sdk-go from 1.52.3 to 1.54.1

Release notes

Sourced from github.com/aws/aws-sdk-go's releases.

Release v1.54.1 (2024-06-13)

Service Client Updates

  • service/cloudhsmv2: Updates service API and documentation
    • Added support for hsm type hsm2m.medium. Added supported for creating a cluster in FIPS or NON_FIPS mode.
  • service/glue: Updates service API and documentation
    • This release adds support for configuration of evaluation method for composite rules in Glue Data Quality rulesets.
  • service/iotwireless: Updates service API
  • service/kms: Updates service API, documentation, and examples
    • This feature allows customers to use their keys stored in KMS to derive a shared secret which can then be used to establish a secured channel for communication, provide proof of possession, or establish trust with other parties.
  • service/mediapackagev2: Updates service API, documentation, and examples

Release v1.54.0 (2024-06-12)

Service Client Updates

  • service/apptest: Updates service API, documentation, waiters, paginators, and examples
  • service/ec2: Updates service API and documentation
    • Tagging support for Traffic Mirroring FilterRule resource
  • service/osis: Updates service API and documentation
  • service/redshift: Updates service API and documentation
    • Updates to remove DC1 and DS2 node types.
  • service/secretsmanager: Updates service API and documentation
    • Introducing RotationToken parameter for PutSecretValue API
  • service/securitylake: Updates service API and documentation
  • service/sesv2: Updates service API and documentation

SDK Features

  • service/backupstorage: Remove Backupstorage
    • This change removes the Backupstorage service, which has been deprecated.

Release v1.53.21 (2024-06-11)

Service Client Updates

  • service/accessanalyzer: Updates service API, documentation, paginators, and examples
  • service/guardduty: Updates service API and documentation
    • Added API support for GuardDuty Malware Protection for S3.
  • service/networkmanager: Updates service API and documentation
  • service/pca-connector-scep: Adds new service
  • service/sagemaker: Updates service API and documentation
    • Introduced Scope and AuthenticationRequestExtraParams to SageMaker Workforce OIDC configuration; this allows customers to modify these options for their private Workforce IdP integration. Model Registry Cross-account model package groups are discoverable.

Release v1.53.20 (2024-06-10)

Service Client Updates

  • service/application-signals: Adds new service
  • service/ecs: Updates service API and documentation

... (truncated)

Commits


Updates github.com/docker/docker from 26.1.1+incompatible to 27.0.0+incompatible

Release notes

Sourced from github.com/docker/docker's releases.

v27.0.0-rc.1

27.0.0-rc.1

For a full list of pull requests and changes in this release, refer to the relevant GitHub milestones:

New

  • Add support to docker stack deploy for driver_opts in a service's networks. docker/cli#5125
  • containerd image store: Add --platform flag to docker image push and improve the default behavior when not all platforms of the multi-platform image are available locally. docker/cli#4984, moby/moby#47679

Bug fixes and enhancements

  • Fix a bug causing the docker CLI to leak UNIX sockets in $TMPDIR in some cases. docker/cli#5146
  • Don't ignore a custom seccomp profile when used in conjunction with --privileged moby/moby#47500
  • rootless: overlay2: support native overlay diff when using rootless-mode in kernel 5.11 and above moby/moby#47605
  • Fix the StartInterval default value of healthcheck to reflect the documented value of 5s. moby/moby#47799
  • Allow sysctls to be set per-interface during container creation and network connection. moby/moby#47686
  • A ULA base prefix is automatically added to default-address-pools if this parameter wasn't manually configured, or if it contains no IPv6 prefixes. This ULA prefix is derived from the Engine host ID such that it's unique across hosts and over time. moby/moby#47853
  • Enable ip6tables by default, it is no longer --experimental. moby/moby#47747
  • Introduce a new subnet allocator that can deal with IPv6 address pools of any size moby/moby#47768
  • For IPv6-enabled bridge networks, do not attempt to replace the bridge's kernel-assigned link local address with fe80::1. moby/moby#47787
  • Fix docker save and docker load not ending on the daemon side when the operation was cancelled (eg. Ctrl+C) moby/moby#47629
  • Container's StartedAt property is now recorded before container startup, guaranteeing that the StartedAt is always before FinishedAt. moby/moby#47003
  • Run an internal resolver on the default bridge network to forward DNS requests to external resolvers, even if they are on localhost addresses, or IPv6 addresses when the default bridge does not have IPv6 connectivity. To preserve existing behavior, the internal resolver on the default bridge will not resolve container names, unlike the resolver on user-defined networks. Do not use Google's DNS servers as a fallback when no external DNS servers are supplied in configuration via --dns or available from the host's resolv.conf. moby/moby#47602
  • If firewalld is running on the host, create policy docker-forwarding to allow forwarding from any zone to the docker zone. This makes it possible to configure a bridge network with a routable IPv6 address, and no masquerading. moby/moby#47745
  • IPv6 can now be enabled by default on all custom networks using dockerd --default-network-opt=bridge=com.docker.network.enable_ipv6=true (and the matching json option). moby/moby#47867
  • The internal DNS resolver used by Windows containers on Windows will now forward requests to external DNS servers by-default, this enables nslookup to resolve external hostnames. This behaviour can be disabled via daemon.json, using "features": { "windows-dns-proxy": false }, the feature flag will be removed in a future release. moby/moby#47826
  • Document the use of driver-opt in the CLI for setting per-interface sysctls. docker/cli#4994
  • Print a warning when the CLI does not have permissions to read the configuration file. docker/cli#5077

API

  • containerd image store: POST /images/{name}/push now supports a platform parameter (JSON encoded OCI Platform type) that allows selecting a specific platform-manifest from the multi-platform image. This is experimental and may change in future API versions. moby/moby#47679
  • ContainerList api returns container annotations. moby/moby#47866
  • Deprecate the daemon flag --api-cors-header and the corresponding daemon.json config param. These will be removed in the next major release. moby/moby#45313
  • Client API callback functions client.RequestPrivilegeFunc, client.ImageSearchOptions.AcceptPermissionsFunc and image.ImportOptions.PrivilegeFunc now require a context parameter. moby/moby#47536
  • Remove deprecated ImageImportOptions, ImageCreateOptions, ImagePullOptions, ImagePushOptions, ImageListOptions, ImageRemoveOptions aliases for Image types. moby/moby#47900
  • Move ExecConfig, ContainerExecInspect, ContainersPruneReport, ContainerPathStat, CopyToContainerOptions, ExecStartCheck and ContainerStats to api/types/container; ImagesPruneReport, ImageImportSource and ImageLoadResponse to api/types/image; ExecStartOptions to api/types/backend; VolumesPruneReport to api/types/volume; EventsOptions to api/types/events; ImageSearchOptions to api/types/registry. moby/moby#47936
  • Deprecate non-standard (config) fields in image inspect output. The Config field returned by this endpoint (used for "image inspect") returned additional fields that are not part of the image's configuration and not part of the [Docker Image Spec] and the [OCI Image Spec]. These fields are never set (and always return the default value for the type), but are not omitted in the response when left empty. As these fields were not intended to be part of the image configuration response, they are deprecated, and will be removed in the future API versions. The following fields are currently included in the API response, but are not part of the underlying image's Config, and deprecated:
    • Hostname

... (truncated)

Commits


Updates github.com/getkin/kin-openapi from 0.124.0 to 0.125.0

Release notes

Sourced from github.com/getkin/kin-openapi's releases.

v0.125.0

What's Changed

New Contributors

Full Changelog: https://github.com/getkin/kin-openapi/compare/v0.124.0...v0.125.0

Commits
  • b18a27a ci: drop CodeQL (#962)
  • 43846d5 openapi3: internalize refs for path parameters (#960)
  • 8d5ee0b changelog: note API breakage from #953 (#957)
  • 518b18d openapi3: move ref codegen to Go (#956)
  • 45b4399 openapi3filter: add context to Validator Middleware's ErrFunc and LogFunc fun...
  • f170f8c openapi3(tests): use testify's YAMLEq function (#954)
  • 2cf1262 openapi{2,3}: surface both json/yaml unmarshal errors (#950)
  • 03281ec openapi3: ensure YAML marshalling matches JSON's (#943)
  • 2ab0c0e openapi3filter: ensure key matches param name before decoding in `(*urlValues...
  • b9f83d9 openapi4filter: improve CSV resp decoder performance (#948)
  • Additional commits viewable in compare view


Updates github.com/go-test/deep from 1.0.8 to 1.1.0

Release notes

Sourced from github.com/go-test/deep's releases.

v1.1.0

New minor release, v1.1, that adds support for optional flags.

What's Changed

Full Changelog: https://github.com/go-test/deep/compare/v1.0.9...v1.1.0

v1.0.9

What's Changed

Full Changelog: https://github.com/go-test/deep/compare/v1.0.8...v1.0.9

Changelog

Sourced from github.com/go-test/deep's changelog.

v1.1.0 released 2022-12-09

  • Add optional flags: Equal(a, b, flags..) and FLAG_IGNORE_SLICE_ORDER (issue #28, PR #56) (@​alenkacz)

v1.0.9 released 2022-12-09

  • Fixed issue #45: Panic when comparing errors in unexported fields (PR #54) (@​seveas)
  • Fixed issue #46: Functions are handled differently from reflect.DeepEqual (PR #55) (@​countcb)
  • Updated matrix to go1.17, go1.18, and go1.19 and moved testing to GitHub Actions
Commits
  • 2f12927 Merge pull request #56 from go-test/issue-28-and-flags
  • d502c9f Merge branch 'master' into issue-28-and-flags
  • b036568 Update changelog for v1.0.9
  • 55ce24e Improve docs and add a test
  • 1a1ed62 Remove dead code comment
  • f39112b Sort strings in TestSliceOrderString to avoid false positives
  • a20c9ea Implment issue 28 with FLAG_IGNORE_SLICE_ORDER
  • 47c10a1 Merge pull request #55 from go-test/cmp-func-issue-46
  • d97d7b6 Make TestNotHandled work with Go 1.17
  • 847b043 Add back TestNotHandled for 100% coverage
  • Additional commits viewable in compare view


Updates github.com/prometheus/client_golang from 1.19.0 to 1.19.1

Release notes

Sourced from github.com/prometheus/client_golang's releases.

v1.19.1

What's Changed

  • Security patches for golang.org/x/sys and google.golang.org/protobuf

New Contributors

Full Changelog: https://github.com/prometheus/client_golang/compare/v1.19.0...v1.19.1

Changelog

Sourced from github.com/prometheus/client_golang's changelog.

Unreleased

Commits


Updates github.com/prometheus/common from 0.53.0 to 0.54.0

Release notes

Sourced from github.com/prometheus/common's releases.

v0.54.0

What's Changed

New Contributors

Full Changelog: https://github.com/prometheus/common/compare/v0.53.0...v0.54.0

Commits
  • 789222a Merge pull request #627 from freak12techno/add-time-template-helpers
  • b2fc541 Merge branch 'main' into add-time-template-helpers
  • 9f1953b chore: review fixes
  • 4f7cf6e Update helpers/templates/convert_to_float.go
  • b9d8f7c Update helpers/templates/humanize_duration.go
  • 80e630e Update helpers/templates/humamize_duration_test.go
  • 6846990 Bump github.com/prometheus/client_golang from 1.19.0 to 1.19.1 in /sigv4 (#639)
  • f93a89e Bump github.com/aws/aws-sdk-go from 1.51.32 to 1.53.14 in /sigv4 (#638)
  • 3ddc148 Merge pull request #636 from prometheus/repo_sync
  • 2b9d805 Update common Prometheus files
  • Additional commits viewable in compare view


Updates golang.org/x/crypto from 0.23.0 to 0.24.0

Commits
  • 332fd65 go.mod: update golang.org/x dependencies
  • 0b431c7 x509roots/fallback: update bundle
  • 349231f ssh: implement CryptoPublicKey on sk keys
  • 44c9b0f ssh: allow server auth callbacks to send additional banners
  • 67b1361 sha3: reenable s390x assembly
  • 477a5b4 sha3: make APIs usable with zero allocations
  • 59b5a86 sha3: disable s390x assembly
  • 10f366e sha3: simplify XOR functions
  • See full diff in compare view


Updates golang.org/x/net from 0.25.0 to 0.26.0

Commits
  • 66e838c go.mod: update golang.org/x dependencies
  • 6249541 http2: avoid race in server handler SetReadDeadine/SetWriteDeadline
  • 603e3e6 quic: disable X25519Kyber768Draft00 in tests
  • 67e8d0c http2: report an error if goroutines outlive serverTester tests
  • 5608279 http2: avoid corruption in priority write scheduler
  • 0d515a5 http2: factor out frame read/write test functions
  • 9f5b79b http2: drop unused retry function
  • 03c24c2 http2: use synthetic time in server tests
  • 022530c http2: add a more full-featured test net.Conn
  • 410d19e http2: avoid racy access to clientStream.requestedGzip
  • Additional commits viewable in compare view


Updates golang.org/x/oauth2 from 0.20.0 to 0.21.0

Commits


Updates google.golang.org/api from 0.177.0 to 0.183.0

Release notes

Sourced from google.golang.org/api's releases.

v0.183.0

0.183.0 (2024-06-04)

Features

Bug Fixes

v0.182.0

0.182.0 (2024-05-28)

Features

v0.181.0

0.181.0 (2024-05-16)

Features

v0.180.0

... (truncated)

Changelog

Sourced from google.golang.org/api's changelog.

0.183.0 (2024-06-04)

Features

  • <... _Description has been truncated_
netlify[bot] commented 4 months ago

Deploy Preview for ohsu-comp-bio-funnel canceled.

Name Link
Latest commit 4171d6fa58be7be1314c882a64e8a945204d0f53
Latest deploy log https://app.netlify.com/sites/ohsu-comp-bio-funnel/deploys/666c27f6619dfe0008d5bf26
dependabot[bot] commented 3 months ago

Looks like these dependencies are updatable in another way, so this is no longer needed.