Standardizing mavis_path and oncotree_code variables

oicr-gsi / djerba

Create cancer bioinformatics reports from metadata and workflow output

GNU General Public License v3.0

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Standardizing mavis_path and oncotree_code variables #449

Closed OumaimaHamza closed 2 months ago

OumaimaHamza commented 2 months ago

Generating a report with the parameters "oncotree code" and "mavis path" now results in an "Unknown INI parameter" error. The variables have been standardized to oncotree_code and mavis_path.

OumaimaHamza commented 2 months ago

All tests pass