Write test for the similarity calculation.

oist-ncbc / spykesim

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

https://pypi.org/project/spykesim

MIT License

20 stars 3 forks source link

Write test for the similarity calculation. #1

Closed KeitaW closed 6 years ago

KeitaW commented 6 years ago

[ ] Create a branch for this issue.
[ ] Copy https://github.com/KeitaW/Chaldea/blob/master/chaldea/edit_sim.jl to this repo.
[ ] Write tests based on edt_sim.jl.
[x] Write a draft function using numpy
[x] Write a faster-version using Cython

tuanpham96 commented 5 years ago

Hi, this is an interesting method. I am trying it on a set of data and I was wondering if you have plans to include detection/extraction of sequences; or do you have any suggestion of the approach?

I have plotting out the windows which belong to the same cluster, along with the spikes of those windows but they do not seem to match well with each other, nor with the cluster profiles in es.profiles. Do you have any suggestion?