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oist-ncbc / spykesim

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).
https://pypi.org/project/spykesim
MIT License
20 stars 3 forks source link

Sequence detection from Profiles. #14

Closed KeitaW closed 5 years ago

KeitaW commented 5 years ago

Hi, this is an interesting method. I am trying it on a set of data and I was wondering if you have plans to include detection/extraction of sequences; or do you have any suggestion of the approach?

I have plotting out the windows which belong to the same cluster, along with the spikes of those windows but they do not seem to match well with each other, nor with the cluster profiles in es.profiles. Do you have any suggestion?

Originally posted by @tuanpham96 in https://github.com/KeitaW/spykesim/issues/1#issuecomment-524117754

KeitaW commented 5 years ago

Thank you for your suggestion. Let me open a new issue here for tracking. I will get back to you on that soon :)

KeitaW commented 5 years ago

The suggestion is, I can add some small function that will do the job. Give me some time for that. Thanks!

KeitaW commented 5 years ago

Sorry for taking a long time. I have implemented the functionality in https://github.com/KeitaW/spykesim/pull/20 and just merged. @tuanpham96 , you can now try the functionality by upgrading Spykesim to 1.2.4 . You can also find an example in https://github.com/KeitaW/spykesim/blob/master/docs/tutorial.ipynb . Thanks!