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oist / Usiigaci

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
MIT License
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PB with cell tracking #18

Closed Romain-Morichon closed 3 years ago

Romain-Morichon commented 3 years ago

Hello, i try to use usiigacy with the cell tracking part. I've installed anaconda tu run ussigaci. when i try to open the folder to test the cell tracking, i've got this error. error

I've just started python programming so take it easy with the explanation :-)

Have a nice day

Romain

carmilla94 commented 3 years ago

Hi, I am having he same problem. Have you find the solution?

Have a nice day,

Carmen

Romain-Morichon commented 3 years ago

Unfortunatly, I still have this problem. Actually, i use active contour with the software ICY to make the tracks and tracking manager in ICY to have differents parameters.

have a nice day

Romain

carmilla94 commented 3 years ago

Tru to change pims_sequence = pims.ImageSequence(join(path, '.{}'.format(file_extension)), process_func=None) for pims_sequence = pims.ImageSequence(join(path, '.{}'.format(file_extension))) in cell_io.py

Romain-Morichon commented 3 years ago

Thx a lot! It's works now!!