Bump pynwb from 2.2.0 to 2.5.0

[dependabot[bot]]

Bumps pynwb from 2.2.0 to 2.5.0.

Release notes

Sourced from pynwb's releases.

2.5.0

No release notes provided.

2.4.0

PyNWB 2.4.0 (July 23, 2023)

Enhancements and minor changes

• Add support for ExternalResources. @​mavaylon1 #1684
• Update links for making a release. @​mavaylon1 #1720

Bug fixes

• Fixed sphinx-gallery setting to correctly display index in the docs with sphinx-gallery>=0.11. @​oruebel #1733

Documentation and tutorial enhancements

• Added thumbnail for Optogentics tutorial. @​oruebel #1729
• Update and fix errors in tutorials. @​bendichter @​oruebel

2.3.3

PyNWB 2.3.3 (June 26, 2023)

Enhancements and minor changes

• Add testing support for Python 3.11. @​rly #1687
• Add CI testing of NWB files on DANDI. @​rly #1695

Bug fixes

• Remove unused, deprecated codecov package from dev installation requirements. @​rly #1688
• Remove references to discontinued requires.io service in documentation. @​rly #1690
• Update requirements-doc.txt to resolve Python 3.7 incompatibility. @​rly #1694
• Fixed test battery to show and check for warnings appropriately. @​rly #1698

2.3.2

PyNWB 2.3.2 (April 10, 2023)

Enhancements and minor changes

• Fixed typos and added codespell GitHub action to check spelling in the future. @​yarikoptic #1648

Documentation and tutorial enhancements

• Added OnePhotonSeries to calcium imaging tutorial. @​bendichter #1658
• Add tutorial for optogenetics. @​bendichter #1657
• Update testing of gallery examples and disable testing of the allensdk tutorial. #1680
• Updated tutorials to follow best practices. @​bendichter #1656

Bug fixes

• Fixed bug when initializing OnePhotonSeries with no value for binning. @​bendichter #1660
• Fixed bug in NWBHDF5IO.nwb_version property to support files written by third-party software with a fixed-length nwb_version attribute. @​oruebel #1669

... (truncated)

Changelog

Sourced from pynwb's changelog.

PyNWB 2.5.0 (August 18, 2023)

Enhancements and minor changes

• Add TimeSeries.get_timestamps(). @​bendichter #1741
• Add TimeSeries.get_data_in_units(). @​bendichter #1745
• Updated ExternalResources name change to HERD, along with HDMF 3.9.0 being the new minimum. @​mavaylon1 #1754

Documentation and tutorial enhancements

• Updated streaming tutorial to ensure code is run on tests and clarify text. @​bendichter #1760 @​oruebel #1762
• Fixed minor documentation build warnings and broken links to basic_trials tutorial @​oruebel #1762

PyNWB 2.4.1 (July 26, 2023)

• Stop running validation tests as part of integration tests. They cause issues in CI and can be run separately. @​rly #1740

PyNWB 2.4.0 (July 23, 2023)

Enhancements and minor changes

• Add support for ExternalResources. @​mavaylon1 #1684
• Update links for making a release. @​mavaylon1 #1720

Bug fixes

• Fixed sphinx-gallery setting to correctly display index in the docs with sphinx-gallery>=0.11. @​oruebel #1733

Documentation and tutorial enhancements

• Added thumbnail for Optogentics tutorial. @​oruebel #1729
• Update and fix errors in tutorials. @​bendichter @​oruebel

PyNWB 2.3.3 (June 26, 2023)

Enhancements and minor changes

• Add testing support for Python 3.11. @​rly #1687
• Add CI testing of NWB files on DANDI. @​rly #1695

Bug fixes

• Remove unused, deprecated codecov package from dev installation requirements. @​rly #1688
• Remove references to discontinued requires.io service in documentation. @​rly #1690
• Update requirements-doc.txt to resolve Python 3.7 incompatibility. @​rly #1694
• Fixed test battery to show and check for warnings appropriately. @​rly #1698

PyNWB 2.3.2 (April 10, 2023)

Enhancements and minor changes

• Fixed typos and added codespell GitHub action to check spelling in the future. @​yarikoptic #1648

Documentation and tutorial enhancements

• Added OnePhotonSeries to calcium imaging tutorial. @​bendichter #1658

... (truncated)

Commits

• 68c4f56 Release 2.5.0/ Update ExternalResources to HERD (#1754)
• 8eb9a36 Up/strem tutorial (#1762)
• c26f9e0 refactor streaming tutorial to expose Python code (#1760)
• 977a3bc improve the read tutorial (#1757)
• 24feaf5 flake8 (#1758)
• 946070b Enh mock nwbfile (#1707)
• 74c045a add TimeSeries.get_data_in_units() (#1745)
• f0b3317 add get_timestamps to TimeSeries (#1741)
• ee86890 Don't run validation test in integration tests (#1740)
• 65c25ab improve tutorials (#1738)
• Additional commits viewable in compare view

You can trigger a rebase of this PR by commenting @dependabot rebase.

---

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Note Automatic rebases have been disabled on this pull request as it has been open for over 30 days.