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ole-tange / barmaids

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population information: allow for a 1000G like file? #49

Closed sapfo closed 11 years ago

sapfo commented 11 years ago

http://www.1000genomes.org/category/vcf

to specify the population info they use a separate tab delimited file in the 1000G. I wonder if we should do the same...

sapfo commented 11 years ago

Very similar to a tfam. Difference might be in the tab delimited versus space delimited. Also tfam has in principle more columns. So we just need to be able to parse something with relevant info on the first two columns.

sapfo commented 11 years ago

--tfam: will force it to read that file as a tfam format is (but we only care about the first two columns).

sapfo commented 11 years ago

if easy: we would prefer that it overwrites in case of a

  1. tfam, tped
  2. vcf
  3. mike
ole-tange commented 11 years ago

Implemented in [274].