bam file compatibilty

[pranathivemuri]

Many thanks to contributing to nf-core/kmer-similarity!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

• [ ] This comment contains a description of changes (with reason)
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [ ] If necessary, also make a PR on the nf-core/kmer-similarity branch on the nf-core/test-datasets repo
• [ ] Ensure the test suite passes (nextflow run . -profile test,docker).
• [ ] Make sure your code lints (nf-core lint .).
• [ ] Documentation in docs is updated
• [ ] CHANGELOG.md is updated
• [ ] README.md is updated

Learn more about contributing: https://github.com/nf-core/kmer-similarity/tree/master/.github/CONTRIBUTING.md

[pranathivemuri]

changed the base branch to dev after reading the guidelines, but dev branch has some commits that are not in master, and viceversa too. But I wanted to make sure tests pass, and without pointing to dev tests are not passing because of this - '[ $TRAVIS_PULL_REQUEST = "false" ] || [ $TRAVIS_BRANCH != "master" ] || ([ $TRAVIS_PULL_REQUEST_SLUG = $TRAVIS_REPO_SLUG ] && [ $TRAVIS_PULL_REQUEST_BRANCH = "dev" ])' in .travis.yml

@olgabot let me know if I can remove it and base the PR off to master

[olgabot]

Similar to https://github.com/czbiohub/nf-kmer-similarity/pull/30, I just realized this was a PR to czbiohub/nf-kmer-similarity which I'm trying to deprecate. Can you close and reopen to https://github.com/nf-core/kmermaid ?

[pranathivemuri]

closing in favor of https://github.com/nf-core/kmermaid/pull/10