Create MSA algorythm

[oliszymanski]

Input:

• dcitionary of sequence ID's
• number of nucleotides to align

Create a "Pythonian multimap":

• [x] keys: nucleotides (and the unknown if theres a match ["N" in sequence] )
• [x] vals: set of matched positions

Looping:

• [x] n-th position in each sequence ID
• [x] if match has been found, add position to set of values

[oliszymanski]

Generate files from MSA:

• [ ] .dnd file ( for creating a phylogenetic tree )
• [x] sequence file ( optional )