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oljagrk / jmodeltest2

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Computation of likelihood scores interrupted. #28

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1.Check the format using alter
2.Upload the file
3.Run the program

What is the expected output? What do you see instead?
The Calculations instead I have an error

Phyml version = 3.0
 Phyml binary = PhyML_3.0_win32.exe
 Phyml path = C:\Program Files\jmodeltest-2.1.6\exe\phyml\
 Candidate models = 88
   number of substitution schemes = 11
   including models with equal/unequal base frequencies (+F)
   including models with/without a proportion of invariable sites (+I)
   including models with/without rate variation among sites (+G) (nCat = 4)
 Optimized free parameters (K) = substitution parameters + 55 branch lengths + topology 
 Base tree for likelihood calculations = ML tree
 Tree topology search operation = NNI

::Progress::

Model        Exec. Time      Total Time      -lnL
-------------------------------------------------------------------------

Computation of likelihood scores interrupted. It took 00h:00:14:08.

What version of the product are you using? On what operating system?
jmodeltest 2.1.6 with window 7

Please provide any additional information below.
I run this file few days ago. But today suddenly it doesn,t work.
When i run with example files there is no error, that means the program is OK.
My data file is composed only numbers and nucleotide sequences.
I don't know why it has error
would you help me?

Original issue reported on code.google.com by chorong0...@gmail.com on 2 Sep 2014 at 1:19

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GoogleCodeExporter commented 9 years ago 
Could you please check the PhyML-log tab? It's odd that it worked before and 
now it doesn't. Just in case, I attached again the input file adding 's' to the 
beginning of the taxa names. Purely numeric taxa names should not be a problem, 
and actually I can run your alignment, but maybe there is some kind of problem 
in the windows binary.

Original comment by DiegoDL84 on 2 Sep 2014 at 8:29

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