omarwagih ggseqlogo issues

omarwagih / ggseqlogo

Publication-quality sequence logos in R

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issues

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Plotting the PFMs output from Seq2Logo with Kullback - Leibler

#40 wshen2 opened 1 month ago
0
The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as of ggplot2 3.3.4.

#39 rongxinzh opened 3 months ago
0
error in makePFM when using method='prob'

#38 dxl3742 opened 6 months ago
0
RNA seq logo

#37 XqKang opened 9 months ago
0
Package was removed from CRAN

#36 aviezerl closed 7 months ago
2
exclude WT sequence from seqlogo results

#35 weipinghh opened 10 months ago
0
The vignette acts weirdly in RStudio

#34 pormr closed 1 year ago
2
Fixed ggplot2 `guides` deprecation warning

#33 aviezerl closed 1 month ago
0
Deprecated feature from ggplot2 3.3.4 used in ggseqlogo

#32 Brochiert opened 1 year ago
0
sequence logo with phosphorylated amino acids

#31 ryoshunki opened 1 year ago
3
Error for single base plotting

#30 kaufm202 opened 1 year ago
0
Glitch or Feature? Either methods do not represent the true distribution of an allele when gaps are involved

#29 moa4020 opened 1 year ago
3
<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as of ggplot2 3.3.4

#28 moa4020 opened 1 year ago
1
Gaps

#27 PotapenkoEugene opened 1 year ago
0
Amino acid chemistry color scheme

#26 durrantmm opened 2 years ago
0
Error bars

#25 rioualen opened 2 years ago
1
The Character "U" i s missing for aa

#24 lwlive closed 2 years ago
2
GC percent correction

#23 ryuma-matsubara opened 2 years ago
1
Change numbers on the x-axis of logos

#22 maximus-sci opened 2 years ago
3
Keep same nucleotide order across all positions ?

#21 rezenman opened 3 years ago
0
Logo Range

#20 haruosuz opened 3 years ago
2
add option to avoid using small sample correction?

#19 jayoung opened 3 years ago
0
Version of LGPL?

#18 smoe closed 4 years ago
1
Using list of sequences vs. PWM to generate plot produces different bit heights

#17 sd46w closed 4 years ago
2
bug fix to allow single-column "logos"

#16 cvaske closed 1 month ago
0
Height method

#15 adminshuang opened 5 years ago
0
Facet plots in `geom_logo` should follow ggplot2 conventions

#14 MattBrauer closed 5 years ago
4
Added support for dataframe as input in geom_seqlogo

#13 soumitrakp opened 5 years ago
0
different color schemes for different sites?

#12 jbloom closed 5 years ago
2
Using different TSD lengths as facetting variable

#11 mobilegenome closed 5 years ago
1
Fixed stacking order

#10 mathieudupont closed 6 years ago
2
Separate scale

#9 ewallace opened 6 years ago
1
Custom x-scale - separate scale_x_logo from geom_logo?

#8 ewallace opened 6 years ago
1
Implement EDLogo in ggseqlogo?

#7 ewallace opened 6 years ago
0
Greek letters not supported

#6 aroelo closed 5 years ago
1
stack_with affects x axis tick positions

#5 pwwang opened 6 years ago
0
Top most letters plottet incorrectly if ylim is smaller than sum of position

#4 leonjessen closed 7 years ago
1
Sample data not working

#3 egenomics closed 7 years ago
1
Small Sample Correction Not working

#2 jglavina closed 7 years ago
1
Strange `custom` behaviour when dimensions are not matched.

#1 ivan-krukov closed 7 years ago
1