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Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
https://www.openmicroscopy.org/bio-formats
GNU General Public License v2.0
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Import failure of Ionpath MIBITIFF with ImageJ and Bio-Formats 6.10 / 6.12 (current) #3961

Closed christianrickert closed 1 year ago

christianrickert commented 1 year ago

There might be a issue with Bio-Formats when importing of Ionpath MIBITIFF-compatible files in ImageJ 1.54c (Java 1.8.0_322, 64-bit):

Example: [FOV1-1] MoQC-100.zip

image

Bio-Formats 6.10.1 (plugins/bio-formats_plugins-6.10.1-20220731.012559-15.jar), from Bio-Formats in ImageJ Updater

loci.formats.FormatException: Unexpected format in SIMS description JSON.
    at loci.formats.in.IonpathMIBITiffReader.initStandardMetadata(IonpathMIBITiffReader.java:142)
    at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:98)
    at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:610)
    at loci.formats.FormatReader.setId(FormatReader.java:1443)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:499)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
    at loci.plugins.in.Importer.showDialogs(Importer.java:140)
    at loci.plugins.in.Importer.run(Importer.java:76)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:244)
    at ij.IJ.runPlugIn(IJ.java:210)
    at ij.IJ.runPlugIn(IJ.java:199)
    at loci.plugins.shortcut.ShortcutPanel$1.run(ShortcutPanel.java:189)

Bio-Formats 6.11.1 (plugins/bio-formats_plugins-6.11.1.jar), currently ships with Fiji

(no issue)

Bio-Formats 6.12.0 (plugins/bio-formats_plugins-6.12.0.jar), updated by ImageJ Updater's default sites

java.lang.IllegalStateException: Too early in import process: current step is FILE, but must be after STACK
    at loci.plugins.in.ImportProcess.assertStep(ImportProcess.java:778)
    at loci.plugins.in.ImportProcess.getReader(ImportProcess.java:306)
    at loci.plugins.in.Importer.run(Importer.java:99)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:244)
    at ij.IJ.runPlugIn(IJ.java:210)
    at ij.IJ.runPlugIn(IJ.java:199)
    at loci.plugins.shortcut.ShortcutPanel$1.run(ShortcutPanel.java:189)

The latest commit in IonpathMIBITiffReader.java was on September 17, 2018.

Independent from the specific file type, I can see the step is FILE, but must be after STACK error being described earlier image.sc: Cannot import .czi stacks to FIJI Some .ndpi files not opening in Qupath v0.4.1 Exception Issue when opening .nd2 files with Bio-Formats Error importing .czi videos

dgault commented 1 year ago

Hi @christianrickert, thank you for reporting the issue and providing aa sample file. This looks to be an odd issue as the IonpathMIBITiffReader hasn't changed in quite some time. I tested the sample file with Bio-Formats 6.12.0 and was unable to reproduce the exception. When looking into the metadata in the file, it is always using "image.type":"SIMS" which is correct and shouldn't produce any issue.

The stack trace from the ImageJ plugin is perhaps a bit misleading as you will see the same stack for many different types of exceptions caught in the plugin.

Since the version that worked for you was a version that shipped directly with FIJI, I suspect the issue may be with the dependencies in your FIJI environment when modifying it from the update site. Could you list the names of jars in your FIJI/jars folder and also FIJI/jars/bio-formats?

christianrickert commented 1 year ago

hi @dgault, thanks for looking into this issue!

Here's the diff information after the update, which breaks the image import:

--- C:\Users\Christian Rickert\Desktop\working.txt
+++ C:\Users\Christian Rickert\Desktop\broken.txt
@@ -1,20 +1,20 @@
  Directory of C:\Software\Fiji.app\jars\bio-formats

-12/01/2022  03:44 PM           142,617 formats-api-6.11.1.jar
-12/01/2022  03:44 PM           908,900 formats-bsd-6.11.1.jar
-12/01/2022  03:44 PM         1,515,803 formats-gpl-6.11.1.jar
+03/17/2023  09:33 AM           142,597 formats-api-6.12.0.jar
+03/17/2023  09:33 AM           909,142 formats-bsd-6.12.0.jar
+03/17/2023  09:33 AM         1,517,182 formats-gpl-6.12.0.jar
 12/01/2022  03:44 PM               511 jai_imageio-0.0.0-STUB.jar
 12/01/2022  03:44 PM           508,170 jxrlib-all-0.2.4.jar
-12/01/2022  03:44 PM            14,129 metakit-5.3.4.jar
-12/01/2022  03:44 PM            94,415 ome-codecs-0.4.1.jar
-12/01/2022  03:44 PM           142,397 ome-common-6.0.13.jar
+03/17/2023  09:33 AM            14,139 metakit-5.3.5.jar
+03/17/2023  09:33 AM            94,394 ome-codecs-0.4.4.jar
+03/17/2023  09:33 AM           142,438 ome-common-6.0.14.jar
 12/01/2022  03:44 PM         1,050,320 ome-jai-0.1.3.jar
 12/01/2022  03:44 PM            92,339 ome-mdbtools-5.3.2.jar
 12/01/2022  03:44 PM           951,883 ome-poi-5.3.7.jar
-12/01/2022  03:44 PM           676,795 ome-xml-6.3.1.jar
-12/01/2022  03:44 PM           629,575 specification-6.3.1.jar
-12/01/2022  03:44 PM         1,296,289 turbojpeg-6.11.1.jar
-              14 File(s)      8,024,143 bytes
+03/17/2023  09:33 AM           652,500 ome-xml-6.3.2.jar
+03/17/2023  09:33 AM           629,511 specification-6.3.2.jar
+03/17/2023  09:33 AM         1,296,289 turbojpeg-6.12.0.jar
+              14 File(s)      8,001,415 bytes

  Directory of C:\Software\Fiji.app\jars

@@ -64,7 +64,7 @@
 12/01/2022  03:44 PM           984,052 bigdataviewer-core-10.4.3.jar
 12/01/2022  03:44 PM            76,089 bigdataviewer-vistools-1.0.0-beta-31.jar
 12/01/2022  03:44 PM           368,632 bij-1.0.0.jar
-03/14/2023  11:07 AM    <DIR>          bio-formats
+03/17/2023  09:33 AM    <DIR>          bio-formats
 12/01/2022  03:44 PM            60,250 blas-0.8.jar
 12/01/2022  03:44 PM           208,593 bounce-0.18.jar
 12/01/2022  03:44 PM           485,354 bsh-2.1.0.jar
@@ -243,7 +243,7 @@
 12/01/2022  03:44 PM         9,534,389 jruby-core-9.1.17.0.jar
 12/01/2022  03:44 PM         8,892,481 jruby-stdlib-9.1.17.0.jar
 12/01/2022  03:44 PM           282,591 jsch-0.1.55.jar
-12/01/2022  03:44 PM            45,944 json-20090211.jar
+03/17/2023  09:33 AM            70,348 json-20220924.jar
 12/01/2022  03:44 PM           293,671 jsoup-1.7.2.jar
 12/01/2022  03:44 PM            59,716 jsr166y-1.7.0.jar
 12/01/2022  03:44 PM            19,936 jsr305-3.0.2.jar
@@ -408,4 +408,4 @@
 12/01/2022  03:45 PM           120,069 xpp3-1.1.4c.jar
 12/01/2022  03:45 PM           116,013 xz-1.9.jar
 12/01/2022  03:45 PM               511 yecht-0.0.0-STUB.jar
-             388 File(s)    244,722,475 bytes
+             388 File(s)    244,746,879 bytes

In addition to the updates to Bio-Formats, I see that the json-*.jar was updated as a dependency.

Full directory information after installation: ```terminal // Fiji (v.1.53t) after installation - works Directory of C:\Software\Fiji.app\jars\bio-formats 12/01/2022 03:44 PM 142,617 formats-api-6.11.1.jar 12/01/2022 03:44 PM 908,900 formats-bsd-6.11.1.jar 12/01/2022 03:44 PM 1,515,803 formats-gpl-6.11.1.jar 12/01/2022 03:44 PM 511 jai_imageio-0.0.0-STUB.jar 12/01/2022 03:44 PM 508,170 jxrlib-all-0.2.4.jar 12/01/2022 03:44 PM 14,129 metakit-5.3.4.jar 12/01/2022 03:44 PM 94,415 ome-codecs-0.4.1.jar 12/01/2022 03:44 PM 142,397 ome-common-6.0.13.jar 12/01/2022 03:44 PM 1,050,320 ome-jai-0.1.3.jar 12/01/2022 03:44 PM 92,339 ome-mdbtools-5.3.2.jar 12/01/2022 03:44 PM 951,883 ome-poi-5.3.7.jar 12/01/2022 03:44 PM 676,795 ome-xml-6.3.1.jar 12/01/2022 03:44 PM 629,575 specification-6.3.1.jar 12/01/2022 03:44 PM 1,296,289 turbojpeg-6.11.1.jar 14 File(s) 8,024,143 bytes Directory of C:\Software\Fiji.app\jars 12/01/2022 03:44 PM 21,967 ahocorasick-0.2.4.jar 12/01/2022 03:44 PM 183,081 aircompressor-0.18.jar 12/01/2022 03:44 PM 4,933 alphanumeric-comparator-1.4.1.jar 12/01/2022 03:44 PM 3,448 animal-sniffer-annotations-1.17.jar 12/01/2022 03:44 PM 17,536 annotations-13.0.jar 12/01/2022 03:44 PM 2,036,195 ant-1.9.7.jar 12/01/2022 03:44 PM 18,365 ant-launcher-1.9.7.jar 12/01/2022 03:44 PM 1,153,819 antlr-3.5.2.jar 12/01/2022 03:44 PM 167,761 antlr-runtime-3.5.2.jar 12/01/2022 03:44 PM 445,288 antlr.antlr-2.7.7.jar 12/01/2022 03:44 PM 45,087 api-common-1.8.1.jar 12/01/2022 03:44 PM 155,379 args4j-2.33.jar 12/01/2022 03:44 PM 114,762 asm-7.1.jar 12/01/2022 03:44 PM 33,379 asm-analysis-7.1.jar 12/01/2022 03:44 PM 70,394 asm-commons-7.1.jar 12/01/2022 03:44 PM 50,303 asm-tree-7.1.jar 12/01/2022 03:44 PM 81,554 asm-util-7.1.jar 12/01/2022 03:44 PM 5,915 auto-value-annotations-1.7.jar 12/01/2022 03:44 PM 153,791 autocomplete-3.1.5.jar 12/01/2022 03:44 PM 1,012,131 aws-java-sdk-core-1.11.796.jar 12/01/2022 03:44 PM 592,180 aws-java-sdk-kms-1.11.796.jar 12/01/2022 03:44 PM 1,060,649 aws-java-sdk-s3-1.11.796.jar 12/01/2022 03:44 PM 212,796 base-18.09.0.jar 12/01/2022 03:44 PM 17,008 base64-2.3.8.jar 12/01/2022 03:44 PM 22,262 batch-processor-0.4.2.jar 12/01/2022 03:44 PM 485,809 batik-anim-1.14.jar 12/01/2022 03:44 PM 424,624 batik-awt-util-1.14.jar 12/01/2022 03:44 PM 703,757 batik-bridge-1.14.jar 12/01/2022 03:44 PM 8,433 batik-constants-1.14.jar 12/01/2022 03:44 PM 330,318 batik-css-1.14.jar 12/01/2022 03:44 PM 184,487 batik-dom-1.14.jar 12/01/2022 03:44 PM 10,238 batik-ext-1.14.jar 12/01/2022 03:44 PM 192,087 batik-gvt-1.14.jar 12/01/2022 03:44 PM 11,466 batik-i18n-1.14.jar 12/01/2022 03:44 PM 76,875 batik-parser-1.14.jar 12/01/2022 03:44 PM 25,876 batik-script-1.14.jar 12/01/2022 03:44 PM 6,663 batik-shared-resources-1.14.jar 12/01/2022 03:44 PM 232,734 batik-svg-dom-1.14.jar 12/01/2022 03:44 PM 227,514 batik-svggen-1.14.jar 12/01/2022 03:44 PM 127,477 batik-util-1.14.jar 12/01/2022 03:44 PM 33,866 batik-xml-1.14.jar 12/01/2022 03:44 PM 870,638 bcpkix-jdk15on-1.62.jar 12/01/2022 03:44 PM 4,558,151 bcprov-jdk15on-1.62.jar 12/01/2022 03:44 PM 984,052 bigdataviewer-core-10.4.3.jar 12/01/2022 03:44 PM 76,089 bigdataviewer-vistools-1.0.0-beta-31.jar 12/01/2022 03:44 PM 368,632 bij-1.0.0.jar 03/14/2023 11:07 AM bio-formats 12/01/2022 03:44 PM 60,250 blas-0.8.jar 12/01/2022 03:44 PM 208,593 bounce-0.18.jar 12/01/2022 03:44 PM 485,354 bsh-2.1.0.jar 12/01/2022 03:44 PM 11,032 bytelist-1.0.15.jar 12/01/2022 03:44 PM 972,531 caffeine-2.4.0.jar 12/01/2022 03:44 PM 4,061,482 cdm-core-5.3.3.jar 12/01/2022 03:44 PM 193,322 checker-qual-2.5.2.jar 12/01/2022 03:44 PM 3,622,815 clojure-1.8.0.jar 12/01/2022 03:44 PM 152,436 codemodel-2.6.jar 12/01/2022 03:44 PM 531,557 collections-generic-4.01.jar 12/01/2022 03:44 PM 246,918 commons-beanutils-1.9.4.jar 12/01/2022 03:44 PM 347,669 commons-codec-1.14.jar 12/01/2022 03:44 PM 588,337 commons-collections-3.2.2.jar 12/01/2022 03:44 PM 751,914 commons-collections4-4.4.jar 12/01/2022 03:44 PM 1,018,316 commons-compress-1.21.jar 12/01/2022 03:44 PM 276,413 commons-io-2.7.jar 12/01/2022 03:44 PM 284,220 commons-lang-2.6.jar 12/01/2022 03:44 PM 587,402 commons-lang3-3.12.0.jar 12/01/2022 03:44 PM 61,829 commons-logging-1.2.jar 12/01/2022 03:44 PM 988,514 commons-math-2.2.jar 12/01/2022 03:44 PM 2,213,560 commons-math3-3.6.1.jar 12/01/2022 03:44 PM 238,400 commons-text-1.10.0.jar 12/01/2022 03:44 PM 415,578 commons-vfs2-2.0.jar 12/01/2022 03:44 PM 167,028 datasets-0.8.1906.jar 12/01/2022 03:44 PM 14,108 directories-24.jar 12/01/2022 03:44 PM 16,400 dirgra-0.3.jar 12/01/2022 03:44 PM 348,669 ejml-0.25.jar 12/01/2022 03:44 PM 13,694 error_prone_annotations-2.2.0.jar 12/01/2022 03:44 PM 82,778 eventbus-1.4.jar 12/01/2022 03:44 PM 69,111 f2jutil-0.8.jar 12/01/2022 03:44 PM 4,617 failureaccess-1.0.1.jar 12/01/2022 03:44 PM 255,597 ffmpeg-4.2.1-1.5.2.jar 12/01/2022 03:44 PM 48,427 fiji-2.9.0.jar 12/01/2022 03:44 PM 511 fiji-compat-0.0.0-STUB.jar 12/01/2022 03:44 PM 91,774 fiji-lib-2.1.3.jar 12/01/2022 03:44 PM 1,580,554 FilamentDetector-2.0.0.jar 12/01/2022 03:44 PM 340,318 filters-2.0.235.jar 12/01/2022 03:44 PM 710,382 flatlaf-2.4.jar 12/01/2022 03:44 PM 33,585 fontchooser-2.4.jar 12/01/2022 03:44 PM 329,259 gax-1.56.0.jar 12/01/2022 03:44 PM 70,423 gax-httpjson-0.73.0.jar 12/01/2022 03:44 PM 21,029 gcc-runtime-0.8.1906.jar 12/01/2022 03:44 PM 511 gentyref-0.0.0-STUB.jar 12/01/2022 03:44 PM 360,964 gluegen-rt-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 207,091 google-api-client-1.30.9.jar 12/01/2022 03:44 PM 158,343 google-api-services-cloudresourcemanager-v1-rev20200210-1.30.9.jar 12/01/2022 03:44 PM 186,564 google-api-services-storage-v1-rev20200326-1.30.9.jar 12/01/2022 03:44 PM 5,666 google-auth-library-credentials-0.20.0.jar 12/01/2022 03:44 PM 105,290 google-auth-library-oauth2-http-0.20.0.jar 12/01/2022 03:44 PM 130,890 google-cloud-core-1.93.2.jar 12/01/2022 03:44 PM 14,831 google-cloud-core-http-1.93.2.jar 12/01/2022 03:44 PM 76,342 google-cloud-resourcemanager-0.117.2-alpha.jar 12/01/2022 03:44 PM 333,523 google-cloud-storage-1.108.0.jar 12/01/2022 03:44 PM 288,497 google-http-client-1.40.0.jar 12/01/2022 03:44 PM 18,015 google-http-client-appengine-1.40.0.jar 12/01/2022 03:44 PM 8,404 google-http-client-jackson2-1.40.0.jar 12/01/2022 03:44 PM 30,659 google-http-client-xml-1.40.0.jar 12/01/2022 03:44 PM 66,780 google-oauth-client-1.30.5.jar 12/01/2022 03:44 PM 1,384,400 gpars-1.2.1.jar 12/01/2022 03:44 PM 131,797 graphics-0.8.1906.jar 12/01/2022 03:44 PM 94,199 grDevices-0.8.1906.jar 12/01/2022 03:44 PM 7,930,517 groovy-3.0.4.jar 12/01/2022 03:44 PM 11,685 groovy-dateutil-3.0.4.jar 12/01/2022 03:44 PM 133,135 groovy-json-3.0.4.jar 12/01/2022 03:44 PM 21,294 groovy-jsr223-3.0.4.jar 12/01/2022 03:44 PM 431,100 groovy-swing-3.0.4.jar 12/01/2022 03:44 PM 97,279 groovy-templates-3.0.4.jar 12/01/2022 03:44 PM 284,606 groovy-xml-3.0.4.jar 12/01/2022 03:44 PM 29,411 grpc-context-1.22.1.jar 12/01/2022 03:44 PM 249,277 gson-2.9.0.jar 12/01/2022 03:44 PM 2,746,671 guava-27.1-jre.jar 12/01/2022 03:44 PM 780,321 httpclient-4.5.13.jar 12/01/2022 03:44 PM 328,436 httpcore-4.4.14.jar 12/01/2022 03:44 PM 41,787 httpmime-4.5.9.jar 12/01/2022 03:44 PM 69,117 httpservices-5.3.3.jar 12/01/2022 03:44 PM 11,916,846 icu4j-59.1.jar 12/01/2022 03:44 PM 2,478,297 ij-1.53t.jar 12/01/2022 03:44 PM 170,035 ij1-patcher-1.2.2.jar 12/01/2022 03:44 PM 31,881 image4j-0.7.jar 12/01/2022 03:44 PM 11,326 imagej-2.9.0.jar 12/01/2022 03:44 PM 482,358 imagej-common-1.0.0.jar 12/01/2022 03:44 PM 700,307 imagej-deprecated-0.1.5.jar 12/01/2022 03:44 PM 24,175 imagej-launcher-6.0.2.jar 12/01/2022 03:44 PM 468,912 imagej-legacy-0.39.2.jar 12/01/2022 03:44 PM 57,055 imagej-mesh-0.8.1.jar 12/01/2022 03:44 PM 15,348 imagej-mesh-io-0.1.2.jar 12/01/2022 03:44 PM 36,445 imagej-notebook-0.7.1.jar 12/01/2022 03:44 PM 1,914,566 imagej-ops-0.48.0.jar 12/01/2022 03:44 PM 5,771 imagej-plugins-batch-0.1.1.jar 12/01/2022 03:44 PM 354,841 imagej-plugins-commands-0.8.1.jar 12/01/2022 03:44 PM 51,513 imagej-plugins-tools-0.3.1.jar 12/01/2022 03:44 PM 22,393 imagej-plugins-uploader-ssh-0.3.2.jar 12/01/2022 03:44 PM 21,126 imagej-plugins-uploader-webdav-0.3.2.jar 12/01/2022 03:44 PM 35,701 imagej-scripting-0.8.3.jar 12/01/2022 03:44 PM 10,992 imagej-ui-awt-0.3.1.jar 12/01/2022 03:44 PM 268,366 imagej-ui-swing-0.23.3.jar 12/01/2022 03:44 PM 251,737 imagej-updater-0.11.0.jar 12/01/2022 03:44 PM 856,100 imglib2-5.12.0.jar 12/01/2022 03:44 PM 704,882 imglib2-algorithm-0.12.1.jar 12/01/2022 03:44 PM 20,656 imglib2-algorithm-fft-0.2.1.jar 12/01/2022 03:44 PM 154,505 imglib2-algorithm-gpl-0.3.0.jar 12/01/2022 03:44 PM 193,100 imglib2-cache-1.0.0-beta-16.jar 12/01/2022 03:44 PM 101,588 imglib2-ij-2.0.0.jar 12/01/2022 03:44 PM 53,861 imglib2-label-multisets-0.11.4.jar 12/01/2022 03:44 PM 117,192 imglib2-realtransform-3.1.2.jar 12/01/2022 03:44 PM 292,020 imglib2-roi-0.12.1.jar 12/01/2022 03:44 PM 511 imglib2-ui-0.0.0-STUB.jar 12/01/2022 03:44 PM 44,520 invokebinder-1.10.jar 12/01/2022 03:44 PM 565,410 ion-java-1.0.2.jar 12/01/2022 03:44 PM 29,877 istack-commons-runtime-3.0.11.jar 12/01/2022 03:44 PM 2,330,916 itextpdf-5.5.13.1.jar 12/01/2022 03:44 PM 1,282,424 ivy-2.4.0.jar 12/01/2022 03:44 PM 8,782 j2objc-annotations-1.1.jar 12/01/2022 03:44 PM 1,944,932 j3dcore-1.6.0-scijava-2.jar 12/01/2022 03:44 PM 1,047,514 j3dutils-1.6.0-scijava-2.jar 12/01/2022 03:44 PM 338,748 jackrabbit-webdav-2.21.7.jar 12/01/2022 03:44 PM 75,704 jackson-annotations-2.12.5.jar 12/01/2022 03:44 PM 365,536 jackson-core-2.12.5.jar 12/01/2022 03:44 PM 1,515,991 jackson-databind-2.12.5.jar 12/01/2022 03:44 PM 61,502 jackson-dataformat-cbor-2.12.5.jar 12/01/2022 03:44 PM 309,312 jackson-jq-1.0.0-preview.20191208.jar 12/01/2022 03:44 PM 258,160 jai-codec-1.1.3.jar 12/01/2022 03:44 PM 1,900,631 jai-core-1.1.3.jar 12/01/2022 03:44 PM 46,613 jakarta.activation-api-1.2.2.jar 12/01/2022 03:44 PM 115,638 jakarta.xml.bind-api-2.3.3.jar 12/01/2022 03:44 PM 37,424 jama-1.0.3.jar 12/01/2022 03:44 PM 124,262 java-cup-11b-20160615.jar 12/01/2022 03:44 PM 25,259 java-sizeof-0.0.5.jar 12/01/2022 03:44 PM 412,190 javacpp-1.5.2.jar 12/01/2022 03:44 PM 362,872 javaGeom-0.11.1.jar 12/01/2022 03:44 PM 851,531 javassist-3.28.0-GA.jar 12/01/2022 03:44 PM 26,586 javax.annotation-api-1.3.2.jar 12/01/2022 03:44 PM 95,806 javax.servlet-api-3.1.0.jar 12/01/2022 03:44 PM 1,035,660 jaxb-runtime-2.3.3.jar 12/01/2022 03:44 PM 11,008 jblosc-1.0.1.jar 12/01/2022 03:44 PM 9,572 jclipboardhelper-0.1.0.jar 12/01/2022 03:44 PM 1,710,854 jcodings-1.0.55.jar 12/01/2022 03:44 PM 63,504 jcommander-1.48.jar 12/01/2022 03:44 PM 330,507 jcommon-1.0.24.jar 12/01/2022 03:44 PM 33,887 jdatepicker-1.3.2.jar 12/01/2022 03:44 PM 304,924 jdom2-2.0.6.jar 12/01/2022 03:44 PM 553,984 jep-2.4.2.jar 12/01/2022 03:44 PM 722,659 jffi-1.2.19-native.jar 12/01/2022 03:44 PM 151,416 jffi-1.2.20.jar 12/01/2022 03:44 PM 48,619 jfilechooser-bookmarks-0.1.6.jar 12/01/2022 03:44 PM 1,604,073 jfreechart-1.5.3.jar 12/01/2022 03:44 PM 44,602 jfreesvg-3.4.1.jar 12/01/2022 03:44 PM 33,832 jgoodies-common-1.7.0.jar 12/01/2022 03:44 PM 117,714 jgoodies-forms-1.7.2.jar 12/01/2022 03:44 PM 511 jgrapht-0.0.0-STUB.jar 12/01/2022 03:44 PM 1,091,677 jgrapht-core-1.4.0.jar 12/01/2022 03:44 PM 832,333 jgraphx-4.1.0.jar 12/01/2022 03:44 PM 8,467,645 jhdf5-19.04.1.jar 12/01/2022 03:44 PM 133,503 jheaps-0.11.jar 12/01/2022 03:44 PM 2,098,069 jhotdraw-7.6.0.jar 12/01/2022 03:44 PM 19,020 jitk-tps-3.0.3.jar 12/01/2022 03:44 PM 268,597 jline-2.14.5.jar 12/01/2022 03:44 PM 27,584 jmespath-java-1.11.796.jar 12/01/2022 03:44 PM 1,866,196 jna-5.12.1.jar 12/01/2022 03:44 PM 86,270 jnr-a64asm-1.0.0.jar 12/01/2022 03:44 PM 550,091 jnr-constants-0.9.12.jar 12/01/2022 03:44 PM 27,586 jnr-enxio-0.16.jar 12/01/2022 03:44 PM 697,106 jnr-ffi-2.1.10.jar 12/01/2022 03:44 PM 61,647 jnr-netdb-1.1.6.jar 12/01/2022 03:44 PM 254,279 jnr-posix-3.0.50.jar 12/01/2022 03:44 PM 44,804 jnr-unixsocket-0.17.jar 12/01/2022 03:44 PM 219,943 jnr-x86asm-1.0.2.jar 12/01/2022 03:44 PM 66,496 joal-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 285,789 jocl-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 643,778 joda-time-2.10.6.jar 12/01/2022 03:44 PM 3,568,895 jogl-all-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 688,049 joml-1.10.2.jar 12/01/2022 03:44 PM 214,815 joni-2.1.29.jar 12/01/2022 03:44 PM 1,469,651 jpedalSTD-2.80b11.jar 12/01/2022 03:44 PM 55,500 jply-0.2.0.jar 12/01/2022 03:44 PM 9,534,389 jruby-core-9.1.17.0.jar 12/01/2022 03:44 PM 8,892,481 jruby-stdlib-9.1.17.0.jar 12/01/2022 03:44 PM 282,591 jsch-0.1.55.jar 12/01/2022 03:44 PM 45,944 json-20090211.jar 12/01/2022 03:44 PM 293,671 jsoup-1.7.2.jar 12/01/2022 03:44 PM 59,716 jsr166y-1.7.0.jar 12/01/2022 03:44 PM 19,936 jsr305-3.0.2.jar 12/01/2022 03:44 PM 498,954 jtransforms-2.4.jar 12/01/2022 03:44 PM 40,973 jung-api-2.0.1.jar 12/01/2022 03:44 PM 62,328 jung-graph-impl-2.0.1.jar 12/01/2022 03:44 PM 117,846 JWlz-1.4.0.jar 12/01/2022 03:44 PM 511 jython-shaded-0.0.0-STUB.jar 12/01/2022 03:44 PM 15,146,995 jython-slim-2.7.2.jar 12/01/2022 03:44 PM 71,976 jzlib-1.1.3.jar 12/01/2022 03:44 PM 273,210 Kappa-2.0.0.jar 12/01/2022 03:44 PM 1,488,668 kotlin-stdlib-1.4.21.jar 12/01/2022 03:44 PM 191,536 kotlin-stdlib-common-1.4.21.jar 12/01/2022 03:44 PM 337,512 kryo-4.0.2.jar 12/01/2022 03:44 PM 1,132,674 languagesupport-3.1.4.jar 12/01/2022 03:44 PM 960,384 lapack-0.8.jar 12/01/2022 03:44 PM 873,305 legacy-imglib1-1.1.9.jar 12/01/2022 03:44 PM 2,199 listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar 12/01/2022 03:44 PM 511 log4j-0.0.0-STUB.jar 12/01/2022 03:44 PM 290,339 logback-classic-1.2.3.jar 12/01/2022 03:44 PM 471,901 logback-core-1.2.3.jar 12/01/2022 03:44 PM 682,804 lz4-java-1.8.0.jar 12/01/2022 03:44 PM 511 mapdb-0.0.0-STUB.jar 12/01/2022 03:44 PM 40,987 markdownj-0.3.0-1.0.2b4.jar 12/01/2022 03:44 PM 94,421 maven-scm-api-1.4.jar 12/01/2022 03:44 PM 40,066 maven-scm-provider-svn-commons-1.4.jar 12/01/2022 03:44 PM 69,858 maven-scm-provider-svnexe-1.4.jar 12/01/2022 03:44 PM 732,543 metadata-extractor-2.18.0.jar 12/01/2022 03:44 PM 1,338,906 methods-0.8.1906.jar 12/01/2022 03:44 PM 106,939 miglayout-core-5.2.jar 12/01/2022 03:44 PM 22,390 miglayout-swing-5.2.jar 12/01/2022 03:44 PM 2,011,420 mines-jtk-20151125.jar 12/01/2022 03:44 PM 59,232 minimaven-2.2.2.jar 12/01/2022 03:44 PM 127,821 minio-5.0.2.jar 12/01/2022 03:44 PM 5,711 minlog-1.3.0.jar 12/01/2022 03:44 PM 4,616 modulator-1.0.jar 12/01/2022 03:44 PM 352,241 mpicbg-1.4.2.jar 12/01/2022 03:44 PM 268,984 mtj-1.0.4.jar 12/01/2022 03:44 PM 246,777 multiverse-core-0.7.0.jar 12/01/2022 03:44 PM 54,637 n5-2.5.1.jar 12/01/2022 03:44 PM 12,543 n5-aws-s3-3.2.0.jar 12/01/2022 03:44 PM 6,101 n5-blosc-1.1.0.jar 12/01/2022 03:44 PM 17,340 n5-google-cloud-3.3.2.jar 12/01/2022 03:44 PM 20,442 n5-hdf5-1.4.2.jar 12/01/2022 03:44 PM 127,600 n5-ij-3.2.3.jar 12/01/2022 03:44 PM 226,752 n5-imglib2-4.3.0.jar 12/01/2022 03:44 PM 41,382 n5-zarr-0.0.8.jar 12/01/2022 03:44 PM 32,927 nailgun-server-0.9.1.jar 12/01/2022 03:44 PM 20,592 native-lib-loader-2.4.0.jar 12/01/2022 03:44 PM 509 netcdf-0.0.0-STUB.jar 12/01/2022 03:44 PM 604,886 netlib-java-0.9.3-renjin-patched-2.jar 12/01/2022 03:44 PM 278,395 netty-buffer-4.1.45.Final.jar 12/01/2022 03:44 PM 318,353 netty-codec-4.1.45.Final.jar 12/01/2022 03:44 PM 611,552 netty-common-4.1.45.Final.jar 12/01/2022 03:44 PM 449,349 netty-handler-4.1.45.Final.jar 12/01/2022 03:44 PM 32,798 netty-resolver-4.1.45.Final.jar 12/01/2022 03:44 PM 472,685 netty-transport-4.1.45.Final.jar 12/01/2022 03:44 PM 25,501 object-inspector-0.1.jar 12/01/2022 03:44 PM 54,391 objenesis-2.5.1.jar 12/01/2022 03:44 PM 1,763,194 ojalgo-45.1.1.jar 12/01/2022 03:44 PM 792,699 okhttp-4.7.2.jar 12/01/2022 03:44 PM 243,330 okio-2.6.0.jar 12/01/2022 03:44 PM 21,013 OMEVisual-2.0.0.jar 12/01/2022 03:44 PM 52,969 op-finder-0.1.4.jar 12/01/2022 03:44 PM 351,668 opencensus-api-0.24.0.jar 12/01/2022 03:44 PM 23,420 opencensus-contrib-http-util-0.24.0.jar 12/01/2022 03:44 PM 213,787 opencsv-5.2.jar 12/01/2022 03:44 PM 14,188 options-1.4.jar 12/01/2022 03:44 PM 44,492 pal-optimization-2.0.1.jar 12/01/2022 03:44 PM 47,683 parsington-3.0.0.jar 12/01/2022 03:44 PM 123,598 perf4j-0.9.16.jar 12/01/2022 03:44 PM 382,233 picocli-4.3.2.jar 12/01/2022 03:44 PM 250,546 plexus-utils-1.5.6.jar 12/01/2022 03:44 PM 1,006,549 postgresql-42.2.24.jar 12/01/2022 03:44 PM 118,147 prettytime-4.0.1.Final.jar 12/01/2022 03:44 PM 1,340,328 proto-google-common-protos-1.17.0.jar 12/01/2022 03:44 PM 145,612 proto-google-iam-v1-0.13.0.jar 12/01/2022 03:44 PM 1,660,960 protobuf-java-3.11.4.jar 12/01/2022 03:44 PM 73,874 protobuf-java-util-3.11.4.jar 12/01/2022 03:44 PM 120,871 re2j-1.3.jar 12/01/2022 03:44 PM 20,883 reflectasm-1.11.3.jar 12/01/2022 03:44 PM 25,429 regexp-1.3.jar 12/01/2022 03:44 PM 357,566 reload4j-1.2.18.3.jar 12/01/2022 03:44 PM 23,134 renjin-appl-0.8.1906.jar 12/01/2022 03:44 PM 3,211,680 renjin-core-0.8.1906.jar 12/01/2022 03:44 PM 85,644 renjin-gnur-runtime-0.8.1906.jar 12/01/2022 03:44 PM 17,452 renjin-script-engine-0.8.1906.jar 12/01/2022 03:44 PM 1,188,593 rhino-1.7.6.jar 12/01/2022 03:44 PM 1,245,900 rsyntaxtextarea-3.1.6.jar 12/01/2022 03:44 PM 9,807,458 scala-compiler-2.12.1.jar 12/01/2022 03:44 PM 5,272,325 scala-library-2.12.1.jar 12/01/2022 03:44 PM 3,538,697 scala-reflect-2.12.1.jar 12/01/2022 03:44 PM 547,860 scala-xml_2.12-1.0.6.jar 12/01/2022 03:44 PM 955,280 scifio-0.43.3.jar 12/01/2022 03:44 PM 22,256 scifio-bf-compat-4.1.0.jar 12/01/2022 03:44 PM 36,613 scifio-cli-0.6.1.jar 12/01/2022 03:44 PM 30,071 scifio-hdf5-0.2.2.jar 12/01/2022 03:44 PM 1,007,491 scifio-jai-imageio-1.1.1.jar 12/01/2022 03:44 PM 18,163 scifio-lifesci-0.9.0.jar 12/01/2022 03:44 PM 56,911 scifio-ome-xml-0.17.1.jar 03/14/2023 11:08 AM 903,721 scijava-common-2.90.1.jar 12/01/2022 03:44 PM 7,473 scijava-config-2.0.2.jar 12/01/2022 03:44 PM 9,843 scijava-io-http-0.2.1.jar 12/01/2022 03:44 PM 9,384 scijava-listeners-1.0.0-beta-3.jar 12/01/2022 03:44 PM 7,311 scijava-optional-1.0.1.jar 12/01/2022 03:44 PM 25,349 scijava-plot-0.2.0.jar 12/01/2022 03:44 PM 23,508 scijava-plugins-commands-0.2.3.jar 12/01/2022 03:44 PM 9,431 scijava-plugins-platforms-0.3.1.jar 12/01/2022 03:44 PM 4,362 scijava-plugins-text-markdown-0.1.3.jar 12/01/2022 03:44 PM 4,301 scijava-plugins-text-plain-0.1.3.jar 12/01/2022 03:44 PM 80,761 scijava-search-1.0.0.jar 12/01/2022 03:44 PM 72,510 scijava-table-1.0.1.jar 12/01/2022 03:44 PM 48,165 scijava-ui-awt-0.1.7.jar 12/01/2022 03:44 PM 241,529 scijava-ui-swing-0.17.2.jar 12/01/2022 03:44 PM 331,816 script-editor-0.7.9.jar 12/01/2022 03:44 PM 59,123 script-editor-jython-0.1.3.jar 12/01/2022 03:44 PM 7,214 scripting-beanshell-0.4.1.jar 12/01/2022 03:44 PM 9,331 scripting-clojure-0.1.6.jar 12/01/2022 03:44 PM 12,474 scripting-groovy-0.4.2.jar 12/01/2022 03:44 PM 18,949 scripting-java-0.4.1.jar 12/01/2022 03:44 PM 7,748 scripting-javascript-0.5.0.jar 12/01/2022 03:44 PM 8,057 scripting-jruby-0.3.1.jar 12/01/2022 03:44 PM 5,837 scripting-jython-1.0.0.jar 12/01/2022 03:44 PM 7,046 scripting-renjin-0.2.3.jar 12/01/2022 03:44 PM 6,919 scripting-scala-0.2.2.jar 12/01/2022 03:44 PM 276,420 serializer-2.7.2.jar 12/01/2022 03:44 PM 41,513 slf4j-api-1.7.32.jar 12/01/2022 03:44 PM 329,836 snakeyaml-1.29.jar 12/01/2022 03:44 PM 115,700 spim_data-2.2.7.jar 12/01/2022 03:44 PM 6,043,326 sqlite-jdbc-3.28.0.jar 12/01/2022 03:44 PM 239,543 ST4-4.0.8.jar 12/01/2022 03:44 PM 759,376 stats-0.8.1906.jar 12/01/2022 03:44 PM 8,607 swing-checkbox-tree-1.0.2.jar 12/01/2022 03:44 PM 12,591 swing-worker-1.1.jar 12/01/2022 03:44 PM 1,389,926 swingx-1.6.1.jar 12/01/2022 03:44 PM 1,353,271 T2-NIT-1.1.3.jar 12/01/2022 03:44 PM 8,282 T2-TreelineGraph-1.1.3.jar 12/01/2022 03:44 PM 513,258 threetenbp-1.4.1.jar 12/01/2022 03:44 PM 1,533,830 TrackMate-7.9.2.jar 12/01/2022 03:44 PM 60,198 trakem2-transform-1.0.1.jar 12/01/2022 03:44 PM 2,523,218 trove4j-3.0.3.jar 12/01/2022 03:44 PM 71,976 txw2-2.3.3.jar 12/01/2022 03:44 PM 126,892 udunits-4.3.18.jar 12/01/2022 03:44 PM 131,897 ui-behaviour-2.0.7.jar 12/01/2022 03:44 PM 3,329 unsafe-fences-1.0.jar 12/01/2022 03:44 PM 394,440 utils-0.8.1906.jar 12/01/2022 03:44 PM 164,203 vecmath-1.6.0-scijava-2.jar 12/01/2022 03:44 PM 94,027 VectorGraphics2D-0.13.jar 12/01/2022 03:44 PM 47,049 VectorString-2.0.2.jar 12/01/2022 03:44 PM 636,833 VIB-lib-2.2.0.jar 12/01/2022 03:44 PM 14,466 weave_jy2java-2.1.1.jar 12/01/2022 03:44 PM 9,298,053 weka-dev-3.9.5.jar 03/14/2023 11:07 AM win64 12/01/2022 03:45 PM 3,154,938 xalan-2.7.2.jar 12/01/2022 03:45 PM 266,705 xchart-3.5.4.jar 12/01/2022 03:45 PM 935 xerbla-0.8.jar 12/01/2022 03:45 PM 1,446,149 xercesImpl-2.12.2.jar 12/01/2022 03:45 PM 220,536 xml-apis-1.4.01.jar 12/01/2022 03:45 PM 85,686 xml-apis-ext-1.3.04.jar 12/01/2022 03:45 PM 674,607 xmlgraphics-commons-2.6.jar 12/01/2022 03:45 PM 142,953 xmpcore-6.1.11.jar 12/01/2022 03:45 PM 120,069 xpp3-1.1.4c.jar 12/01/2022 03:45 PM 116,013 xz-1.9.jar 12/01/2022 03:45 PM 511 yecht-0.0.0-STUB.jar 388 File(s) 244,722,475 bytes ```
Full directory information after the update: ```terminal // Fiji (v.1.53t) after Bio-Formats update - broken Directory of C:\Software\Fiji.app\jars\bio-formats 03/17/2023 09:33 AM 142,597 formats-api-6.12.0.jar 03/17/2023 09:33 AM 909,142 formats-bsd-6.12.0.jar 03/17/2023 09:33 AM 1,517,182 formats-gpl-6.12.0.jar 12/01/2022 03:44 PM 511 jai_imageio-0.0.0-STUB.jar 12/01/2022 03:44 PM 508,170 jxrlib-all-0.2.4.jar 03/17/2023 09:33 AM 14,139 metakit-5.3.5.jar 03/17/2023 09:33 AM 94,394 ome-codecs-0.4.4.jar 03/17/2023 09:33 AM 142,438 ome-common-6.0.14.jar 12/01/2022 03:44 PM 1,050,320 ome-jai-0.1.3.jar 12/01/2022 03:44 PM 92,339 ome-mdbtools-5.3.2.jar 12/01/2022 03:44 PM 951,883 ome-poi-5.3.7.jar 03/17/2023 09:33 AM 652,500 ome-xml-6.3.2.jar 03/17/2023 09:33 AM 629,511 specification-6.3.2.jar 03/17/2023 09:33 AM 1,296,289 turbojpeg-6.12.0.jar 14 File(s) 8,001,415 bytes Directory of C:\Software\Fiji.app\jars 12/01/2022 03:44 PM 21,967 ahocorasick-0.2.4.jar 12/01/2022 03:44 PM 183,081 aircompressor-0.18.jar 12/01/2022 03:44 PM 4,933 alphanumeric-comparator-1.4.1.jar 12/01/2022 03:44 PM 3,448 animal-sniffer-annotations-1.17.jar 12/01/2022 03:44 PM 17,536 annotations-13.0.jar 12/01/2022 03:44 PM 2,036,195 ant-1.9.7.jar 12/01/2022 03:44 PM 18,365 ant-launcher-1.9.7.jar 12/01/2022 03:44 PM 1,153,819 antlr-3.5.2.jar 12/01/2022 03:44 PM 167,761 antlr-runtime-3.5.2.jar 12/01/2022 03:44 PM 445,288 antlr.antlr-2.7.7.jar 12/01/2022 03:44 PM 45,087 api-common-1.8.1.jar 12/01/2022 03:44 PM 155,379 args4j-2.33.jar 12/01/2022 03:44 PM 114,762 asm-7.1.jar 12/01/2022 03:44 PM 33,379 asm-analysis-7.1.jar 12/01/2022 03:44 PM 70,394 asm-commons-7.1.jar 12/01/2022 03:44 PM 50,303 asm-tree-7.1.jar 12/01/2022 03:44 PM 81,554 asm-util-7.1.jar 12/01/2022 03:44 PM 5,915 auto-value-annotations-1.7.jar 12/01/2022 03:44 PM 153,791 autocomplete-3.1.5.jar 12/01/2022 03:44 PM 1,012,131 aws-java-sdk-core-1.11.796.jar 12/01/2022 03:44 PM 592,180 aws-java-sdk-kms-1.11.796.jar 12/01/2022 03:44 PM 1,060,649 aws-java-sdk-s3-1.11.796.jar 12/01/2022 03:44 PM 212,796 base-18.09.0.jar 12/01/2022 03:44 PM 17,008 base64-2.3.8.jar 12/01/2022 03:44 PM 22,262 batch-processor-0.4.2.jar 12/01/2022 03:44 PM 485,809 batik-anim-1.14.jar 12/01/2022 03:44 PM 424,624 batik-awt-util-1.14.jar 12/01/2022 03:44 PM 703,757 batik-bridge-1.14.jar 12/01/2022 03:44 PM 8,433 batik-constants-1.14.jar 12/01/2022 03:44 PM 330,318 batik-css-1.14.jar 12/01/2022 03:44 PM 184,487 batik-dom-1.14.jar 12/01/2022 03:44 PM 10,238 batik-ext-1.14.jar 12/01/2022 03:44 PM 192,087 batik-gvt-1.14.jar 12/01/2022 03:44 PM 11,466 batik-i18n-1.14.jar 12/01/2022 03:44 PM 76,875 batik-parser-1.14.jar 12/01/2022 03:44 PM 25,876 batik-script-1.14.jar 12/01/2022 03:44 PM 6,663 batik-shared-resources-1.14.jar 12/01/2022 03:44 PM 232,734 batik-svg-dom-1.14.jar 12/01/2022 03:44 PM 227,514 batik-svggen-1.14.jar 12/01/2022 03:44 PM 127,477 batik-util-1.14.jar 12/01/2022 03:44 PM 33,866 batik-xml-1.14.jar 12/01/2022 03:44 PM 870,638 bcpkix-jdk15on-1.62.jar 12/01/2022 03:44 PM 4,558,151 bcprov-jdk15on-1.62.jar 12/01/2022 03:44 PM 984,052 bigdataviewer-core-10.4.3.jar 12/01/2022 03:44 PM 76,089 bigdataviewer-vistools-1.0.0-beta-31.jar 12/01/2022 03:44 PM 368,632 bij-1.0.0.jar 03/17/2023 09:33 AM bio-formats 12/01/2022 03:44 PM 60,250 blas-0.8.jar 12/01/2022 03:44 PM 208,593 bounce-0.18.jar 12/01/2022 03:44 PM 485,354 bsh-2.1.0.jar 12/01/2022 03:44 PM 11,032 bytelist-1.0.15.jar 12/01/2022 03:44 PM 972,531 caffeine-2.4.0.jar 12/01/2022 03:44 PM 4,061,482 cdm-core-5.3.3.jar 12/01/2022 03:44 PM 193,322 checker-qual-2.5.2.jar 12/01/2022 03:44 PM 3,622,815 clojure-1.8.0.jar 12/01/2022 03:44 PM 152,436 codemodel-2.6.jar 12/01/2022 03:44 PM 531,557 collections-generic-4.01.jar 12/01/2022 03:44 PM 246,918 commons-beanutils-1.9.4.jar 12/01/2022 03:44 PM 347,669 commons-codec-1.14.jar 12/01/2022 03:44 PM 588,337 commons-collections-3.2.2.jar 12/01/2022 03:44 PM 751,914 commons-collections4-4.4.jar 12/01/2022 03:44 PM 1,018,316 commons-compress-1.21.jar 12/01/2022 03:44 PM 276,413 commons-io-2.7.jar 12/01/2022 03:44 PM 284,220 commons-lang-2.6.jar 12/01/2022 03:44 PM 587,402 commons-lang3-3.12.0.jar 12/01/2022 03:44 PM 61,829 commons-logging-1.2.jar 12/01/2022 03:44 PM 988,514 commons-math-2.2.jar 12/01/2022 03:44 PM 2,213,560 commons-math3-3.6.1.jar 12/01/2022 03:44 PM 238,400 commons-text-1.10.0.jar 12/01/2022 03:44 PM 415,578 commons-vfs2-2.0.jar 12/01/2022 03:44 PM 167,028 datasets-0.8.1906.jar 12/01/2022 03:44 PM 14,108 directories-24.jar 12/01/2022 03:44 PM 16,400 dirgra-0.3.jar 12/01/2022 03:44 PM 348,669 ejml-0.25.jar 12/01/2022 03:44 PM 13,694 error_prone_annotations-2.2.0.jar 12/01/2022 03:44 PM 82,778 eventbus-1.4.jar 12/01/2022 03:44 PM 69,111 f2jutil-0.8.jar 12/01/2022 03:44 PM 4,617 failureaccess-1.0.1.jar 12/01/2022 03:44 PM 255,597 ffmpeg-4.2.1-1.5.2.jar 12/01/2022 03:44 PM 48,427 fiji-2.9.0.jar 12/01/2022 03:44 PM 511 fiji-compat-0.0.0-STUB.jar 12/01/2022 03:44 PM 91,774 fiji-lib-2.1.3.jar 12/01/2022 03:44 PM 1,580,554 FilamentDetector-2.0.0.jar 12/01/2022 03:44 PM 340,318 filters-2.0.235.jar 12/01/2022 03:44 PM 710,382 flatlaf-2.4.jar 12/01/2022 03:44 PM 33,585 fontchooser-2.4.jar 12/01/2022 03:44 PM 329,259 gax-1.56.0.jar 12/01/2022 03:44 PM 70,423 gax-httpjson-0.73.0.jar 12/01/2022 03:44 PM 21,029 gcc-runtime-0.8.1906.jar 12/01/2022 03:44 PM 511 gentyref-0.0.0-STUB.jar 12/01/2022 03:44 PM 360,964 gluegen-rt-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 207,091 google-api-client-1.30.9.jar 12/01/2022 03:44 PM 158,343 google-api-services-cloudresourcemanager-v1-rev20200210-1.30.9.jar 12/01/2022 03:44 PM 186,564 google-api-services-storage-v1-rev20200326-1.30.9.jar 12/01/2022 03:44 PM 5,666 google-auth-library-credentials-0.20.0.jar 12/01/2022 03:44 PM 105,290 google-auth-library-oauth2-http-0.20.0.jar 12/01/2022 03:44 PM 130,890 google-cloud-core-1.93.2.jar 12/01/2022 03:44 PM 14,831 google-cloud-core-http-1.93.2.jar 12/01/2022 03:44 PM 76,342 google-cloud-resourcemanager-0.117.2-alpha.jar 12/01/2022 03:44 PM 333,523 google-cloud-storage-1.108.0.jar 12/01/2022 03:44 PM 288,497 google-http-client-1.40.0.jar 12/01/2022 03:44 PM 18,015 google-http-client-appengine-1.40.0.jar 12/01/2022 03:44 PM 8,404 google-http-client-jackson2-1.40.0.jar 12/01/2022 03:44 PM 30,659 google-http-client-xml-1.40.0.jar 12/01/2022 03:44 PM 66,780 google-oauth-client-1.30.5.jar 12/01/2022 03:44 PM 1,384,400 gpars-1.2.1.jar 12/01/2022 03:44 PM 131,797 graphics-0.8.1906.jar 12/01/2022 03:44 PM 94,199 grDevices-0.8.1906.jar 12/01/2022 03:44 PM 7,930,517 groovy-3.0.4.jar 12/01/2022 03:44 PM 11,685 groovy-dateutil-3.0.4.jar 12/01/2022 03:44 PM 133,135 groovy-json-3.0.4.jar 12/01/2022 03:44 PM 21,294 groovy-jsr223-3.0.4.jar 12/01/2022 03:44 PM 431,100 groovy-swing-3.0.4.jar 12/01/2022 03:44 PM 97,279 groovy-templates-3.0.4.jar 12/01/2022 03:44 PM 284,606 groovy-xml-3.0.4.jar 12/01/2022 03:44 PM 29,411 grpc-context-1.22.1.jar 12/01/2022 03:44 PM 249,277 gson-2.9.0.jar 12/01/2022 03:44 PM 2,746,671 guava-27.1-jre.jar 12/01/2022 03:44 PM 780,321 httpclient-4.5.13.jar 12/01/2022 03:44 PM 328,436 httpcore-4.4.14.jar 12/01/2022 03:44 PM 41,787 httpmime-4.5.9.jar 12/01/2022 03:44 PM 69,117 httpservices-5.3.3.jar 12/01/2022 03:44 PM 11,916,846 icu4j-59.1.jar 12/01/2022 03:44 PM 2,478,297 ij-1.53t.jar 12/01/2022 03:44 PM 170,035 ij1-patcher-1.2.2.jar 12/01/2022 03:44 PM 31,881 image4j-0.7.jar 12/01/2022 03:44 PM 11,326 imagej-2.9.0.jar 12/01/2022 03:44 PM 482,358 imagej-common-1.0.0.jar 12/01/2022 03:44 PM 700,307 imagej-deprecated-0.1.5.jar 12/01/2022 03:44 PM 24,175 imagej-launcher-6.0.2.jar 12/01/2022 03:44 PM 468,912 imagej-legacy-0.39.2.jar 12/01/2022 03:44 PM 57,055 imagej-mesh-0.8.1.jar 12/01/2022 03:44 PM 15,348 imagej-mesh-io-0.1.2.jar 12/01/2022 03:44 PM 36,445 imagej-notebook-0.7.1.jar 12/01/2022 03:44 PM 1,914,566 imagej-ops-0.48.0.jar 12/01/2022 03:44 PM 5,771 imagej-plugins-batch-0.1.1.jar 12/01/2022 03:44 PM 354,841 imagej-plugins-commands-0.8.1.jar 12/01/2022 03:44 PM 51,513 imagej-plugins-tools-0.3.1.jar 12/01/2022 03:44 PM 22,393 imagej-plugins-uploader-ssh-0.3.2.jar 12/01/2022 03:44 PM 21,126 imagej-plugins-uploader-webdav-0.3.2.jar 12/01/2022 03:44 PM 35,701 imagej-scripting-0.8.3.jar 12/01/2022 03:44 PM 10,992 imagej-ui-awt-0.3.1.jar 12/01/2022 03:44 PM 268,366 imagej-ui-swing-0.23.3.jar 12/01/2022 03:44 PM 251,737 imagej-updater-0.11.0.jar 12/01/2022 03:44 PM 856,100 imglib2-5.12.0.jar 12/01/2022 03:44 PM 704,882 imglib2-algorithm-0.12.1.jar 12/01/2022 03:44 PM 20,656 imglib2-algorithm-fft-0.2.1.jar 12/01/2022 03:44 PM 154,505 imglib2-algorithm-gpl-0.3.0.jar 12/01/2022 03:44 PM 193,100 imglib2-cache-1.0.0-beta-16.jar 12/01/2022 03:44 PM 101,588 imglib2-ij-2.0.0.jar 12/01/2022 03:44 PM 53,861 imglib2-label-multisets-0.11.4.jar 12/01/2022 03:44 PM 117,192 imglib2-realtransform-3.1.2.jar 12/01/2022 03:44 PM 292,020 imglib2-roi-0.12.1.jar 12/01/2022 03:44 PM 511 imglib2-ui-0.0.0-STUB.jar 12/01/2022 03:44 PM 44,520 invokebinder-1.10.jar 12/01/2022 03:44 PM 565,410 ion-java-1.0.2.jar 12/01/2022 03:44 PM 29,877 istack-commons-runtime-3.0.11.jar 12/01/2022 03:44 PM 2,330,916 itextpdf-5.5.13.1.jar 12/01/2022 03:44 PM 1,282,424 ivy-2.4.0.jar 12/01/2022 03:44 PM 8,782 j2objc-annotations-1.1.jar 12/01/2022 03:44 PM 1,944,932 j3dcore-1.6.0-scijava-2.jar 12/01/2022 03:44 PM 1,047,514 j3dutils-1.6.0-scijava-2.jar 12/01/2022 03:44 PM 338,748 jackrabbit-webdav-2.21.7.jar 12/01/2022 03:44 PM 75,704 jackson-annotations-2.12.5.jar 12/01/2022 03:44 PM 365,536 jackson-core-2.12.5.jar 12/01/2022 03:44 PM 1,515,991 jackson-databind-2.12.5.jar 12/01/2022 03:44 PM 61,502 jackson-dataformat-cbor-2.12.5.jar 12/01/2022 03:44 PM 309,312 jackson-jq-1.0.0-preview.20191208.jar 12/01/2022 03:44 PM 258,160 jai-codec-1.1.3.jar 12/01/2022 03:44 PM 1,900,631 jai-core-1.1.3.jar 12/01/2022 03:44 PM 46,613 jakarta.activation-api-1.2.2.jar 12/01/2022 03:44 PM 115,638 jakarta.xml.bind-api-2.3.3.jar 12/01/2022 03:44 PM 37,424 jama-1.0.3.jar 12/01/2022 03:44 PM 124,262 java-cup-11b-20160615.jar 12/01/2022 03:44 PM 25,259 java-sizeof-0.0.5.jar 12/01/2022 03:44 PM 412,190 javacpp-1.5.2.jar 12/01/2022 03:44 PM 362,872 javaGeom-0.11.1.jar 12/01/2022 03:44 PM 851,531 javassist-3.28.0-GA.jar 12/01/2022 03:44 PM 26,586 javax.annotation-api-1.3.2.jar 12/01/2022 03:44 PM 95,806 javax.servlet-api-3.1.0.jar 12/01/2022 03:44 PM 1,035,660 jaxb-runtime-2.3.3.jar 12/01/2022 03:44 PM 11,008 jblosc-1.0.1.jar 12/01/2022 03:44 PM 9,572 jclipboardhelper-0.1.0.jar 12/01/2022 03:44 PM 1,710,854 jcodings-1.0.55.jar 12/01/2022 03:44 PM 63,504 jcommander-1.48.jar 12/01/2022 03:44 PM 330,507 jcommon-1.0.24.jar 12/01/2022 03:44 PM 33,887 jdatepicker-1.3.2.jar 12/01/2022 03:44 PM 304,924 jdom2-2.0.6.jar 12/01/2022 03:44 PM 553,984 jep-2.4.2.jar 12/01/2022 03:44 PM 722,659 jffi-1.2.19-native.jar 12/01/2022 03:44 PM 151,416 jffi-1.2.20.jar 12/01/2022 03:44 PM 48,619 jfilechooser-bookmarks-0.1.6.jar 12/01/2022 03:44 PM 1,604,073 jfreechart-1.5.3.jar 12/01/2022 03:44 PM 44,602 jfreesvg-3.4.1.jar 12/01/2022 03:44 PM 33,832 jgoodies-common-1.7.0.jar 12/01/2022 03:44 PM 117,714 jgoodies-forms-1.7.2.jar 12/01/2022 03:44 PM 511 jgrapht-0.0.0-STUB.jar 12/01/2022 03:44 PM 1,091,677 jgrapht-core-1.4.0.jar 12/01/2022 03:44 PM 832,333 jgraphx-4.1.0.jar 12/01/2022 03:44 PM 8,467,645 jhdf5-19.04.1.jar 12/01/2022 03:44 PM 133,503 jheaps-0.11.jar 12/01/2022 03:44 PM 2,098,069 jhotdraw-7.6.0.jar 12/01/2022 03:44 PM 19,020 jitk-tps-3.0.3.jar 12/01/2022 03:44 PM 268,597 jline-2.14.5.jar 12/01/2022 03:44 PM 27,584 jmespath-java-1.11.796.jar 12/01/2022 03:44 PM 1,866,196 jna-5.12.1.jar 12/01/2022 03:44 PM 86,270 jnr-a64asm-1.0.0.jar 12/01/2022 03:44 PM 550,091 jnr-constants-0.9.12.jar 12/01/2022 03:44 PM 27,586 jnr-enxio-0.16.jar 12/01/2022 03:44 PM 697,106 jnr-ffi-2.1.10.jar 12/01/2022 03:44 PM 61,647 jnr-netdb-1.1.6.jar 12/01/2022 03:44 PM 254,279 jnr-posix-3.0.50.jar 12/01/2022 03:44 PM 44,804 jnr-unixsocket-0.17.jar 12/01/2022 03:44 PM 219,943 jnr-x86asm-1.0.2.jar 12/01/2022 03:44 PM 66,496 joal-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 285,789 jocl-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 643,778 joda-time-2.10.6.jar 12/01/2022 03:44 PM 3,568,895 jogl-all-2.4.0-rc-20210111.jar 12/01/2022 03:44 PM 688,049 joml-1.10.2.jar 12/01/2022 03:44 PM 214,815 joni-2.1.29.jar 12/01/2022 03:44 PM 1,469,651 jpedalSTD-2.80b11.jar 12/01/2022 03:44 PM 55,500 jply-0.2.0.jar 12/01/2022 03:44 PM 9,534,389 jruby-core-9.1.17.0.jar 12/01/2022 03:44 PM 8,892,481 jruby-stdlib-9.1.17.0.jar 12/01/2022 03:44 PM 282,591 jsch-0.1.55.jar 03/17/2023 09:33 AM 70,348 json-20220924.jar 12/01/2022 03:44 PM 293,671 jsoup-1.7.2.jar 12/01/2022 03:44 PM 59,716 jsr166y-1.7.0.jar 12/01/2022 03:44 PM 19,936 jsr305-3.0.2.jar 12/01/2022 03:44 PM 498,954 jtransforms-2.4.jar 12/01/2022 03:44 PM 40,973 jung-api-2.0.1.jar 12/01/2022 03:44 PM 62,328 jung-graph-impl-2.0.1.jar 12/01/2022 03:44 PM 117,846 JWlz-1.4.0.jar 12/01/2022 03:44 PM 511 jython-shaded-0.0.0-STUB.jar 12/01/2022 03:44 PM 15,146,995 jython-slim-2.7.2.jar 12/01/2022 03:44 PM 71,976 jzlib-1.1.3.jar 12/01/2022 03:44 PM 273,210 Kappa-2.0.0.jar 12/01/2022 03:44 PM 1,488,668 kotlin-stdlib-1.4.21.jar 12/01/2022 03:44 PM 191,536 kotlin-stdlib-common-1.4.21.jar 12/01/2022 03:44 PM 337,512 kryo-4.0.2.jar 12/01/2022 03:44 PM 1,132,674 languagesupport-3.1.4.jar 12/01/2022 03:44 PM 960,384 lapack-0.8.jar 12/01/2022 03:44 PM 873,305 legacy-imglib1-1.1.9.jar 12/01/2022 03:44 PM 2,199 listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar 12/01/2022 03:44 PM 511 log4j-0.0.0-STUB.jar 12/01/2022 03:44 PM 290,339 logback-classic-1.2.3.jar 12/01/2022 03:44 PM 471,901 logback-core-1.2.3.jar 12/01/2022 03:44 PM 682,804 lz4-java-1.8.0.jar 12/01/2022 03:44 PM 511 mapdb-0.0.0-STUB.jar 12/01/2022 03:44 PM 40,987 markdownj-0.3.0-1.0.2b4.jar 12/01/2022 03:44 PM 94,421 maven-scm-api-1.4.jar 12/01/2022 03:44 PM 40,066 maven-scm-provider-svn-commons-1.4.jar 12/01/2022 03:44 PM 69,858 maven-scm-provider-svnexe-1.4.jar 12/01/2022 03:44 PM 732,543 metadata-extractor-2.18.0.jar 12/01/2022 03:44 PM 1,338,906 methods-0.8.1906.jar 12/01/2022 03:44 PM 106,939 miglayout-core-5.2.jar 12/01/2022 03:44 PM 22,390 miglayout-swing-5.2.jar 12/01/2022 03:44 PM 2,011,420 mines-jtk-20151125.jar 12/01/2022 03:44 PM 59,232 minimaven-2.2.2.jar 12/01/2022 03:44 PM 127,821 minio-5.0.2.jar 12/01/2022 03:44 PM 5,711 minlog-1.3.0.jar 12/01/2022 03:44 PM 4,616 modulator-1.0.jar 12/01/2022 03:44 PM 352,241 mpicbg-1.4.2.jar 12/01/2022 03:44 PM 268,984 mtj-1.0.4.jar 12/01/2022 03:44 PM 246,777 multiverse-core-0.7.0.jar 12/01/2022 03:44 PM 54,637 n5-2.5.1.jar 12/01/2022 03:44 PM 12,543 n5-aws-s3-3.2.0.jar 12/01/2022 03:44 PM 6,101 n5-blosc-1.1.0.jar 12/01/2022 03:44 PM 17,340 n5-google-cloud-3.3.2.jar 12/01/2022 03:44 PM 20,442 n5-hdf5-1.4.2.jar 12/01/2022 03:44 PM 127,600 n5-ij-3.2.3.jar 12/01/2022 03:44 PM 226,752 n5-imglib2-4.3.0.jar 12/01/2022 03:44 PM 41,382 n5-zarr-0.0.8.jar 12/01/2022 03:44 PM 32,927 nailgun-server-0.9.1.jar 12/01/2022 03:44 PM 20,592 native-lib-loader-2.4.0.jar 12/01/2022 03:44 PM 509 netcdf-0.0.0-STUB.jar 12/01/2022 03:44 PM 604,886 netlib-java-0.9.3-renjin-patched-2.jar 12/01/2022 03:44 PM 278,395 netty-buffer-4.1.45.Final.jar 12/01/2022 03:44 PM 318,353 netty-codec-4.1.45.Final.jar 12/01/2022 03:44 PM 611,552 netty-common-4.1.45.Final.jar 12/01/2022 03:44 PM 449,349 netty-handler-4.1.45.Final.jar 12/01/2022 03:44 PM 32,798 netty-resolver-4.1.45.Final.jar 12/01/2022 03:44 PM 472,685 netty-transport-4.1.45.Final.jar 12/01/2022 03:44 PM 25,501 object-inspector-0.1.jar 12/01/2022 03:44 PM 54,391 objenesis-2.5.1.jar 12/01/2022 03:44 PM 1,763,194 ojalgo-45.1.1.jar 12/01/2022 03:44 PM 792,699 okhttp-4.7.2.jar 12/01/2022 03:44 PM 243,330 okio-2.6.0.jar 12/01/2022 03:44 PM 21,013 OMEVisual-2.0.0.jar 12/01/2022 03:44 PM 52,969 op-finder-0.1.4.jar 12/01/2022 03:44 PM 351,668 opencensus-api-0.24.0.jar 12/01/2022 03:44 PM 23,420 opencensus-contrib-http-util-0.24.0.jar 12/01/2022 03:44 PM 213,787 opencsv-5.2.jar 12/01/2022 03:44 PM 14,188 options-1.4.jar 12/01/2022 03:44 PM 44,492 pal-optimization-2.0.1.jar 12/01/2022 03:44 PM 47,683 parsington-3.0.0.jar 12/01/2022 03:44 PM 123,598 perf4j-0.9.16.jar 12/01/2022 03:44 PM 382,233 picocli-4.3.2.jar 12/01/2022 03:44 PM 250,546 plexus-utils-1.5.6.jar 12/01/2022 03:44 PM 1,006,549 postgresql-42.2.24.jar 12/01/2022 03:44 PM 118,147 prettytime-4.0.1.Final.jar 12/01/2022 03:44 PM 1,340,328 proto-google-common-protos-1.17.0.jar 12/01/2022 03:44 PM 145,612 proto-google-iam-v1-0.13.0.jar 12/01/2022 03:44 PM 1,660,960 protobuf-java-3.11.4.jar 12/01/2022 03:44 PM 73,874 protobuf-java-util-3.11.4.jar 12/01/2022 03:44 PM 120,871 re2j-1.3.jar 12/01/2022 03:44 PM 20,883 reflectasm-1.11.3.jar 12/01/2022 03:44 PM 25,429 regexp-1.3.jar 12/01/2022 03:44 PM 357,566 reload4j-1.2.18.3.jar 12/01/2022 03:44 PM 23,134 renjin-appl-0.8.1906.jar 12/01/2022 03:44 PM 3,211,680 renjin-core-0.8.1906.jar 12/01/2022 03:44 PM 85,644 renjin-gnur-runtime-0.8.1906.jar 12/01/2022 03:44 PM 17,452 renjin-script-engine-0.8.1906.jar 12/01/2022 03:44 PM 1,188,593 rhino-1.7.6.jar 12/01/2022 03:44 PM 1,245,900 rsyntaxtextarea-3.1.6.jar 12/01/2022 03:44 PM 9,807,458 scala-compiler-2.12.1.jar 12/01/2022 03:44 PM 5,272,325 scala-library-2.12.1.jar 12/01/2022 03:44 PM 3,538,697 scala-reflect-2.12.1.jar 12/01/2022 03:44 PM 547,860 scala-xml_2.12-1.0.6.jar 12/01/2022 03:44 PM 955,280 scifio-0.43.3.jar 12/01/2022 03:44 PM 22,256 scifio-bf-compat-4.1.0.jar 12/01/2022 03:44 PM 36,613 scifio-cli-0.6.1.jar 12/01/2022 03:44 PM 30,071 scifio-hdf5-0.2.2.jar 12/01/2022 03:44 PM 1,007,491 scifio-jai-imageio-1.1.1.jar 12/01/2022 03:44 PM 18,163 scifio-lifesci-0.9.0.jar 12/01/2022 03:44 PM 56,911 scifio-ome-xml-0.17.1.jar 03/14/2023 11:08 AM 903,721 scijava-common-2.90.1.jar 12/01/2022 03:44 PM 7,473 scijava-config-2.0.2.jar 12/01/2022 03:44 PM 9,843 scijava-io-http-0.2.1.jar 12/01/2022 03:44 PM 9,384 scijava-listeners-1.0.0-beta-3.jar 12/01/2022 03:44 PM 7,311 scijava-optional-1.0.1.jar 12/01/2022 03:44 PM 25,349 scijava-plot-0.2.0.jar 12/01/2022 03:44 PM 23,508 scijava-plugins-commands-0.2.3.jar 12/01/2022 03:44 PM 9,431 scijava-plugins-platforms-0.3.1.jar 12/01/2022 03:44 PM 4,362 scijava-plugins-text-markdown-0.1.3.jar 12/01/2022 03:44 PM 4,301 scijava-plugins-text-plain-0.1.3.jar 12/01/2022 03:44 PM 80,761 scijava-search-1.0.0.jar 12/01/2022 03:44 PM 72,510 scijava-table-1.0.1.jar 12/01/2022 03:44 PM 48,165 scijava-ui-awt-0.1.7.jar 12/01/2022 03:44 PM 241,529 scijava-ui-swing-0.17.2.jar 12/01/2022 03:44 PM 331,816 script-editor-0.7.9.jar 12/01/2022 03:44 PM 59,123 script-editor-jython-0.1.3.jar 12/01/2022 03:44 PM 7,214 scripting-beanshell-0.4.1.jar 12/01/2022 03:44 PM 9,331 scripting-clojure-0.1.6.jar 12/01/2022 03:44 PM 12,474 scripting-groovy-0.4.2.jar 12/01/2022 03:44 PM 18,949 scripting-java-0.4.1.jar 12/01/2022 03:44 PM 7,748 scripting-javascript-0.5.0.jar 12/01/2022 03:44 PM 8,057 scripting-jruby-0.3.1.jar 12/01/2022 03:44 PM 5,837 scripting-jython-1.0.0.jar 12/01/2022 03:44 PM 7,046 scripting-renjin-0.2.3.jar 12/01/2022 03:44 PM 6,919 scripting-scala-0.2.2.jar 12/01/2022 03:44 PM 276,420 serializer-2.7.2.jar 12/01/2022 03:44 PM 41,513 slf4j-api-1.7.32.jar 12/01/2022 03:44 PM 329,836 snakeyaml-1.29.jar 12/01/2022 03:44 PM 115,700 spim_data-2.2.7.jar 12/01/2022 03:44 PM 6,043,326 sqlite-jdbc-3.28.0.jar 12/01/2022 03:44 PM 239,543 ST4-4.0.8.jar 12/01/2022 03:44 PM 759,376 stats-0.8.1906.jar 12/01/2022 03:44 PM 8,607 swing-checkbox-tree-1.0.2.jar 12/01/2022 03:44 PM 12,591 swing-worker-1.1.jar 12/01/2022 03:44 PM 1,389,926 swingx-1.6.1.jar 12/01/2022 03:44 PM 1,353,271 T2-NIT-1.1.3.jar 12/01/2022 03:44 PM 8,282 T2-TreelineGraph-1.1.3.jar 12/01/2022 03:44 PM 513,258 threetenbp-1.4.1.jar 12/01/2022 03:44 PM 1,533,830 TrackMate-7.9.2.jar 12/01/2022 03:44 PM 60,198 trakem2-transform-1.0.1.jar 12/01/2022 03:44 PM 2,523,218 trove4j-3.0.3.jar 12/01/2022 03:44 PM 71,976 txw2-2.3.3.jar 12/01/2022 03:44 PM 126,892 udunits-4.3.18.jar 12/01/2022 03:44 PM 131,897 ui-behaviour-2.0.7.jar 12/01/2022 03:44 PM 3,329 unsafe-fences-1.0.jar 12/01/2022 03:44 PM 394,440 utils-0.8.1906.jar 12/01/2022 03:44 PM 164,203 vecmath-1.6.0-scijava-2.jar 12/01/2022 03:44 PM 94,027 VectorGraphics2D-0.13.jar 12/01/2022 03:44 PM 47,049 VectorString-2.0.2.jar 12/01/2022 03:44 PM 636,833 VIB-lib-2.2.0.jar 12/01/2022 03:44 PM 14,466 weave_jy2java-2.1.1.jar 12/01/2022 03:44 PM 9,298,053 weka-dev-3.9.5.jar 03/14/2023 11:07 AM win64 12/01/2022 03:45 PM 3,154,938 xalan-2.7.2.jar 12/01/2022 03:45 PM 266,705 xchart-3.5.4.jar 12/01/2022 03:45 PM 935 xerbla-0.8.jar 12/01/2022 03:45 PM 1,446,149 xercesImpl-2.12.2.jar 12/01/2022 03:45 PM 220,536 xml-apis-1.4.01.jar 12/01/2022 03:45 PM 85,686 xml-apis-ext-1.3.04.jar 12/01/2022 03:45 PM 674,607 xmlgraphics-commons-2.6.jar 12/01/2022 03:45 PM 142,953 xmpcore-6.1.11.jar 12/01/2022 03:45 PM 120,069 xpp3-1.1.4c.jar 12/01/2022 03:45 PM 116,013 xz-1.9.jar 12/01/2022 03:45 PM 511 yecht-0.0.0-STUB.jar 388 File(s) 244,746,879 bytes ```
dgault commented 1 year ago

Thanks @christianrickert, it does indeed seem to be related to the json jar. I was able to reproduce the issue you are seeing with the json-20220924 jar. The issue seems to occur when reading the channel.mass value from the JSON description, with previous versions of the jar this returned a String value but with the latest 20220924 version it is now returning a double value.

The reader will need to be updated to handle both of the possible return values. Until that is updated you would be best reverting back to the json-20090211.jar if possible.

christianrickert commented 1 year ago

Very nice! 👏

I got a dependency warning when updating Bio-Formats to the latest version:

image

depW

Looks like the dependency is only evaluated during installation, not at runtime. - I kept a copy of the older version and replaced the new version.

Do you think it's worth communicating this issue in the json-*.jar to the corresponding folks? An altered return type will break a lot of workflows and would require a lot of readers to be fixed too.

dgault commented 1 year ago

Yeah we will certainly follow up with the ImageJ team on this. Firstly I have opened a PR to look at bumping the json dependency on our side and that will let me see exactly what the impact is and how many readers will be affected - https://github.com/ome/bioformats/pull/3966

christianrickert commented 1 year ago

Much appreciated! 🤝

dgault commented 1 year ago

Closing as this has been resolved with the dependency updates in 6.13.0