TiffReader: mark order as certain if metadata is read from ImageJ tag

ome / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

GNU General Public License v2.0

371 stars 241 forks source link

Fixes #4134

If parseCommentImageJ is invoked, sets the orderCertain flag to true alongside the dimensionOrder and sizes read from the INI-style metadata.

This commit can be tested by following the scenario of the original issue i.e.:

in Fiji, open the Mitosis sample (5D) and save it as a TIFF (with ImageJ metadata) using Save as
without this PR, check that showinf -noflat reports the dimension order as Uncertain
with this PR, check that showinf -noflat reports the dimension order as Certain

ome / bioformats

TiffReader: mark order as certain if metadata is read from ImageJ tag #4135