search

ome / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
https://www.openmicroscopy.org/bio-formats
GNU General Public License v2.0
378 stars 241 forks source link

SVS: Incorrect image colour #4166

Open dgault opened 6 months ago

dgault commented 6 months ago

This issue was raised on forum thread https://forum.image.sc/t/qupath-cant-open-svs-images-from-aperio-versa-slide-scanner/93502/8 and appears to be very similar to issues seen with other formats such as https://github.com/ome/bioformats/issues/3510

The files showing the issue ere acquired from Aperio VERSA slide scanner and when opened display as 'pink', which can be seen in the screenshots in the linked forum thread.

A sample file showing the problem was provided and the issue could be reproduced with Bio-Formats 7.2.0, it is available at inbox/imagesc-93502

imagesc-bot commented 6 months ago

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/qupath-cant-open-svs-images-from-aperio-versa-slide-scanner/93502/10