Closed constantinpape closed 2 years ago
This issue still persists after fixing the image-label
field. The fixed data is available here:
https://oc.embl.de/index.php/s/zsg7aHyg1R7aFgh
This is fixed now since I have switched fully to https://github.com/ome/ome-zarr-py (which is possible now due to the changes in 0.4.0
). So there was probably still some issue with the metadata I wrote with my custom script.
For me opening the data from https://oc.embl.de/index.php/s/wfpdHpgHseGUTYK fails if I open it via
$ napari MMStack_Pos0.ome.zarr
. But opening it via drag and drop works. See the full stack trace below. Note that opening other ome.zarrs works via the CLI, e.g.$ napari https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.3/idr0079A/9836998.zarr
, and I also successfully tried with some other files from local disc.