ome / ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
https://ngff.openmicroscopy.org
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Find out what labeled object represents if names to labels have not been given #164

Closed aliaksei-chareshneu closed 1 year ago

aliaksei-chareshneu commented 1 year ago

Dear all,

Could you tell me please, how can one find out what each labeled object actually represents (nucleus, mitochondria etc.) if names to labels (like here: https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0052A/5514375.zarr/labels) have not been given (which is the case of https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr)?

Thank you for any input, Aliaksei

will-moore commented 1 year ago

Answered at https://forum.image.sc/t/interpreting-ome-zarr-ngff-data/74459/2