ome / ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
https://ngff.openmicroscopy.org
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BIA plates fail to render in vizarr #274

Open joshmoore opened 4 days ago

joshmoore commented 4 days ago

Opening this here as a follow on to #256 but the fix will likely either need to live on the BIA side or in vizarr:

opening Plates in vizarr often doesn't work because of the trailing /0 as it's expecting bioformats2raw format. E.g https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c.html shows nothing, and when you open in vizarr you get: https://hms-dbmi.github.io/vizarr/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c/02fb729e-803a-4c2e-b40c-cf58d839567c.zarr/0 which looks broken. You need to remove the trailing /0 before it's viewable.

cc: @manzt @kbab @will-moore @matthewh-ebi