Bioformats layout

[will-moore]

For a bioformats2raw.layout, load the OME/METADATA.xml and show image names, with links to browse to them.

WIP:

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[joshmoore]

https://deploy-preview-13--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/test-data/bf2raw/fake-series-2.zarr results in:

Loading metadata: /OME/METADATA.ome.xml Error loading https://uk1s3.embassy.ebi.ac.uk/idr/zarr/test-data/bf2raw/fake-series-2.zarr//OME/METADATA.ome.xml: Not Found

due to the extra slash (//)

https://deploy-preview-13--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/test-data/bf2raw/plate-rows-2.zarr stops at "loading..."

[will-moore]

@joshmoore Fixed links (and I ignore Bioformats2raw layout for plates). Also, added a vizarr link to each Image

[joshmoore]

Also, added a vizarr link to each Image

That's a good idea for working around https://github.com/hms-dbmi/vizarr/issues/149 :+1:

[joshmoore]

Any other changes expected here, @will-moore ?

[will-moore]

No, I'm not planning to add anything else

[joshmoore]

Propose to release tomorrow as 0.3.0 along with https://github.com/ome/ngff/pull/112#pullrequestreview-1120170007

[will-moore]

@joshmoore I updated version to 0.3.0 and updated changelog

[imagesc-bot]

This pull request has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/intermission-ome-ngff-0-4-1-bioformats2raw-0-5-0-et-al/72214/1

[will-moore]

@joshmoore it looks like something's gone wrong with the deploy as https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.3/9836842.zarr is not showing this PR. The netlify build is OK https://ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.3/9836842.zarr but deploy to gh-pages isn't?

Will look more tomorrow....

[joshmoore]

Think it's just missing the tag. I'll add one now.

[joshmoore]

I take it back. That didn't trigger anything additional; it does look like the deployments just didn't run...

[joshmoore]

Your merge here looks to have triggered the gh-pages branch to be updated:

https://github.com/ome/ome-ngff-validator/tree/gh-pages

but that didn't trigger a job for some reason.