ome / ome-ngff-validator

Web page for validating OME-NGFF files
https://ome.github.io/ome-ngff-validator
BSD 2-Clause "Simplified" License
4 stars 3 forks source link

Multi well validation #14

Closed will-moore closed 1 year ago

will-moore commented 1 year ago

Currently, when validating a Plate, we only validate the First image in each Well and there's no way to validate other Images except to open each Well in turn.

This PR allows you to choose a Well Index to validate and also allows you to validate ALL Wells in a Plate. However, this can result in loading a lot of data, so it's not the default behaviour.

To test, use e.g. plate SQ00014814__2016-05-23T17_24_56-Measurement1.ome.zarr/ PR deployment:

https://deploy-preview-14--ome-ngff-validator.netlify.app/?source=https://cellpainting-gallery.s3.amazonaws.com/cpg0004-lincs/broad/images/2016_04_01_a549_48hr_batch1/images_zarr/SQ00014814__2016-05-23T17_24_56-Measurement1.ome.zarr/

Use the all link to check all Wells (or add &well=all to the URL). This highlights 1 Well that is invalid:

Screenshot 2022-10-17 at 16 12 34

Clicking on that Well shows which Images are invalid:

Screenshot 2022-10-17 at 16 13 40

netlify[bot] commented 1 year ago

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will-moore commented 1 year ago

@sbesson Thanks - Hopefully this is better:

Screenshot 2022-10-18 at 17 31 34

joshmoore commented 1 year ago
Screen Shot 2022-10-24 at 12 38 18

I :heart: the "all images" visualization. :)