List invalid samples in README for testing

ome / ome-ngff-validator

Web page for validating OME-NGFF files

https://ome.github.io/ome-ngff-validator

BSD 2-Clause "Simplified" License

4 stars 3 forks source link

List invalid samples in README for testing #17

Open will-moore opened 1 year ago

will-moore commented 1 year ago

Maybe move these somewhere more permanent first?

Invalid version (fails to load schema) https://deploy-preview-16--ome-ngff-validator.netlify.app/?source=https://minio-dev.openmicroscopy.org/idr/v0.3/invalid/9836842_version.zarr
Various dataset/.zattrs errors (see https://github.com/ome/ome-ngff-validator/pull/16) https://minio-dev.openmicroscopy.org/idr/v0.3/invalid/9836842_dimCount.zarr
axes invalid (schema-validation): https://minio-dev.openmicroscopy.org/idr/v0.3/invalid/9836842_axes.zarr
Image contains invalid labels: https://minio-dev.openmicroscopy.org/idr/v0.4/invalid/6001240.zarr

joshmoore commented 1 year ago

I'd suggest test-data:

mc ls uk1/idr/zarr/test-data
[2022-10-24 09:13:06 CEST]     0B 64x64-fake-v0.1/
[2022-10-24 09:13:06 CEST]     0B 64x64-fake-v0.2/
[2022-10-24 09:13:06 CEST]     0B bf2raw/
[2022-10-24 09:13:06 CEST]     0B idr0044/
[2022-10-24 09:13:06 CEST]     0B labels-0.1.3-dev4/
[2022-10-24 09:13:06 CEST]     0B test-v0.1.zarr/
[2022-10-24 09:13:06 CEST]     0B test-v0.2.zarr/

though we may want to add some more structure to it.

will-moore commented 1 year ago

Another sample I created for testing various NGFF viewers at https://github.com/ome/ngff/pull/139: has downsample factor of 4: created by generating with bioformats2raw (v0.2), then removing alternating levels from the pyramid and updating the .zattrs to make a v0.4 sample: https://minio-dev.openmicroscopy.org/idr/v0.4/idr0082/9846318.zarr/0

joshmoore commented 1 year ago

maybe an explicit uk1/idr/zarr/invalid-data would be safer.