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ome / ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
https://pypi.org/project/ome-zarr
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ome_zarr download uses wrong dimension_separator #231

Open will-moore opened 1 year ago

will-moore commented 1 year ago

It seems that ome_zarr download is writing chunks with "dimension_separator": ".", even when downloading v0.4 data:

$ ome_zarr download https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0138A/TimEmbryos-102219/HybCycle_0/MMStack_Pos0.ome.zarr/ --output MMStack_Pos0.ome.zarr

$ ls -al MMStack_Pos0.ome.zarr/0/
total 250256
drwxr-xr-x  387 wmoore  staff   12384 Oct 19 14:09 .
drwxr-xr-x   10 wmoore  staff     320 Oct 19 14:09 ..
-rw-r--r--    1 wmoore  staff     385 Oct 19 14:09 .zarray
-rw-r--r--    1 wmoore  staff  301361 Oct 19 14:09 0.0.0.0
-rw-r--r--    1 wmoore  staff  313241 Oct 19 14:09 0.0.0.1
-rw-r--r--    1 wmoore  staff  338394 Oct 19 14:09 0.0.0.2
...
joshmoore commented 1 year ago

Uff! That seems like quite the bug.