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ome2024-ngff-challenge
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
https://pypi.org/project/ome2024-ngff-challenge/
BSD 3-Clause "New" or "Revised" License
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List of Zarr v3 issues
#48
joshmoore
opened
5 hours ago
0
add `annotate` command
#47
joshmoore
opened
7 hours ago
0
Support copyrightHolder
#46
joshmoore
opened
8 hours ago
0
How to represent lightsheet data with multiple timepoints / tiles / channels
#45
constantinpape
closed
5 hours ago
2
Resave throws unspecific warning and does nothing
#44
constantinpape
closed
5 days ago
5
resave main() returns nothing to indicate no error
#43
will-moore
closed
5 days ago
6
formatting fixes
#42
will-moore
closed
1 week ago
1
Pin 3.0.0a0 (fix #40)
#41
joshmoore
closed
1 week ago
0
ModuleNotFoundError: No module named 'zarr.buffer'
#40
JThoennissen
closed
1 week ago
4
Update s3 links in README to remove 0.0.5
#39
will-moore
closed
1 week ago
1
Add idr0090 plates to README
#38
will-moore
closed
1 week ago
1
Fix s3 writing and test with moto
#37
joshmoore
opened
1 week ago
0
Updates to the README for release
#36
joshmoore
closed
1 week ago
2
More statistics and conversion notes
#35
joshmoore
closed
1 week ago
0
Term validation
#34
joshmoore
opened
1 week ago
0
Metadata rework
#33
joshmoore
closed
1 week ago
3
Ro-crate json gets generated in incorrect location based on output path
#32
sherwoodf
closed
1 week ago
3
Store statistics in array metadata
#31
joshmoore
closed
2 weeks ago
3
Update README with under-the-hood details
#30
joshmoore
closed
2 weeks ago
1
Convert labels to v0.5
#29
will-moore
closed
2 weeks ago
3
OOM failure for conversion of large images...
#28
will-moore
closed
2 weeks ago
13
Zarr Crate class fixes
#27
sherwoodf
closed
2 weeks ago
1
Add sample links
#26
will-moore
closed
2 weeks ago
1
sharding codec bytes configuration block
#25
will-moore
closed
3 weeks ago
5
Document what `ome2024-ngff-challenge` does under the hood
#24
dstansby
closed
2 weeks ago
1
Parallel writing and other fixes
#23
will-moore
closed
2 weeks ago
5
TypeError: AioSession.__init__() got an unexpected keyword argument '//'
#22
will-moore
opened
4 weeks ago
6
Creator info
#21
will-moore
closed
2 weeks ago
1
Fix sample link in README
#20
will-moore
closed
1 month ago
0
Label support
#19
joshmoore
closed
2 weeks ago
0
Refactor Config and ROCrateWriter
#18
joshmoore
closed
1 month ago
1
Support bioformats2raw.layout
#17
joshmoore
closed
1 month ago
5
Record the version of the challenge that was used for conversion
#16
joshmoore
closed
2 weeks ago
0
Consider re-activating Windows
#15
joshmoore
closed
1 week ago
1
resave.py only creates a zarr.json
#14
dominikl
closed
2 weeks ago
3
build(deps): bump codecov/codecov-action from 4.3.0 to 4.5.0 in the actions group
#13
dependabot[bot]
closed
1 month ago
1
Package Release
#12
joshmoore
closed
1 month ago
1
example of ro-crate-metadata.json with information from zattr file
#11
sherwoodf
opened
1 month ago
2
dev2: update resave
#10
joshmoore
closed
1 month ago
1
Example ro-crate-metadata generation
#9
sherwoodf
closed
1 month ago
6
example with rembi module
#8
Tom-TBT
closed
2 weeks ago
5
CLI tools for Zarr V2->V3 conversion
#7
LDeakin
closed
2 weeks ago
4
Reference typo fix
#6
Tom-TBT
closed
1 month ago
1
dev2: resave.py updates
#5
joshmoore
closed
1 month ago
1
Where to place RO Crate Metadata
#4
sherwoodf
closed
1 week ago
3
Add new dev2/resave.py with sharding example
#3
will-moore
closed
1 month ago
10
created proposal for minimal RO crate metadata
#2
sherwoodf
closed
2 months ago
4
Fix update of version in resave.py
#1
will-moore
closed
2 months ago
1