ome / omero-cli-transfer

An OMERO CLI plugin for creating transfer packets between OMERO servers.
https://pypi.org/project/omero-cli-transfer/
GNU General Public License v2.0
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allow `unpack`ing from a "clean" OME-XML #51

Closed erickmartins closed 1 year ago

erickmartins commented 1 year ago

The use case for using unpack as a bulk import/annotation tool is pretty clear; we already have a structure that relates files to object IDs and that can describe annotations, ROIs and model hierarchy. What would we need to implement to be able to effectively use it as such? How would someone generate an XML from a set of files, potentially edit this XML to add annotations/ROIs/hierarchy, and then just point to the folder containing files + XML for a full unpack?

imagesc-bot commented 1 year ago

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/automatic-image-data-import-tool/81403/10

erickmartins commented 1 year ago

Work is being done on #52

erickmartins commented 1 year ago

52 adds initial support for this.