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ome / omero-cli-zarr

https://pypi.org/project/omero-cli-zarr/
GNU General Public License v2.0
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Scale dict #103

Closed will-moore closed 2 years ago

will-moore commented 2 years ago

As discussed in https://github.com/ome/omero-cli-zarr/pull/93#discussion_r790864982 the API for write_multiscales_metadata() has changed in ome/ome-zarr-py#162 and this PR uses that new API.

Also, this now exports scales metadata as a list [1, 1, 0.5, 0.3, 0.3] instead of using axesIndices.

will-moore commented 2 years ago

@sbesson I think this is ready to review now, with latest https://github.com/ome/ome-zarr-py/pull/162 (both updated to use coordinateTransforms).

will-moore commented 2 years ago

Used this PR in it's current state to export from IDR: https://minio-dev.openmicroscopy.org/idr/v0.4/2022-02-03/idr0062/6001240.zarr (with labels).