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ome / omero-cli-zarr

https://pypi.org/project/omero-cli-zarr/
GNU General Public License v2.0
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Integrate imageMarshal #14

Open joshmoore opened 4 years ago

joshmoore commented 4 years ago

see: https://github.com/IDR/SubmissionWorkflow/pull/7#discussion_r450783384

Rather than curl'ing from OMERO.web (see https://github.com/IDR/SubmissionWorkflow/pull/7), omero-cli-zarr should be able to generate the JSON for imageMarshal directly in Python code.

sbesson commented 2 years ago

For individual images https://github.com/ome/omero-cli-zarr/pull/76 should take care of the OMERO rendering metadata transformation both with/without the --bf flag.

For plates, the logic should be in place when using the OMERO API and there is an RFE for implementing --bf support (https://github.com/ome/omero-cli-zarr/issues/85).

Except in the latter case, I think the requirement to curl the imageMarshal URL is now dropped.