Add 'polygons' command like 'masks'

ome / omero-cli-zarr

https://pypi.org/project/omero-cli-zarr/

GNU General Public License v2.0

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Closed will-moore closed 3 years ago

will-moore commented 3 years ago

Support export of Polygons on an Image (or Plate) to labels.

To test, find an Image with Polygons e.g. on idr0001 image:

$ omero zarr export Image:1229801
$ omero zarr polygons Image:1229801
$ napari 1229801.zarr

joshmoore commented 3 years ago

Ran successfully together with gh-50 after solving the merge conflict on Plate:2551. Waiting for labels to upload to visually verify.

will-moore commented 3 years ago

As discussed, need to add a CLI option to set check_overlaps=False which was needed for Polygons -> labels for idr0001

joshmoore commented 3 years ago

This is the PR that I merged first to generate 2551. Merging now before tagging. I will need to push conflict resolution(s) to the other branch(es).