OMERO Meeting Topics

[jstitlow]

Hello,

The Davis lab have been trialling OMERO figure and have come up with a list of comments / queries that I hope we can discuss at the meeting:

• can you use Gamma as well as max min with contrasting images in figure?
• can you “copy and paste” contrasting settings between images in figure or type in specific contrast values so different images get the same contrast?
• Could there be both max and average projection options for Z-stacks?
• As well as rotate could there also be flip (or mirror) horizontal and vertical?
• When you add images to a figure the most recent image can sit “on top” of another image as an overlay. Is there a way of doing this so you can get multiple image insertson figure independent of the order they were added (Layers)?
• Is there a way of adding arbitrarily placed characters e.g. N for nucleus the same way you can add an arrow anywhere, or even an arbitrary txt box - e.g. for making posters?
• Can you copy multiple image ID's at once from OMERO to paste into OMERO figure?

Many thanks

Josh

[will-moore]

To add multiple Image IDs at once, see the demo at https://youtu.be/8ZKAcowl4Tk?t=1m1s

[will-moore]

Thanks for your feedback and suggestions: We have existing trello cards for a number of your feature requests:

• 'Layers' request is covered by https://trello.com/c/ECUiyEtJ/4-bring-to-front-send-to-back
• Typing in contrast values card is https://trello.com/c/AozomHkL/125-sliders-allow-typing-in-values.
• Arbitrary characters https://trello.com/c/wtu7IVuN/10-stand-alone-labels

And I have created some new cards for others:

• https://trello.com/c/mNvkTWpg/126-rendering-gamma-levels
• https://trello.com/c/3LskKVSw/127-average-intensity-projection
• https://trello.com/c/wlX18bfE/128-flip-vertical-or-horizontal

Look forward to discussing at the Dundee meeting next week

[will-moore]

@jstitlow A current workaround for "Bring to front" functionality is to copy and paste a panel, then delete the original. This will move a panel to the "top" layer.

[jstitlow]

Good idea, thanks.

Josh Titlow, Ph.D. Postdoctoral Research Associate Department of Biochemistry University of Oxford, UK

South Parks Road Oxford OX1 3QU, UK

(p) (44) (0) 1865 613272 (lab) (w) http://joshtitlow.wordpress.com/

On Thu, May 26, 2016 at 1:47 PM, Will Moore notifications@github.com wrote:

@jstitlow https://github.com/jstitlow A current workaround for "Bring to front" functionality is to copy and paste a panel, then delete the original. This will move a panel to the "top" layer.

— You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub https://github.com/ome/figure/issues/155#issuecomment-221860982

[will-moore]

Opened a PR allowing you to type in contrast values: https://github.com/ome/figure/pull/166

[will-moore]

Also created https://trello.com/c/FdxhWDPu/146-shape-text-label Now all points covered by trello cards.... closing issue...