ome / omero-guide-ilastik

BSD 2-Clause "Simplified" License
4 stars 5 forks source link

Labels support #22

Closed jburel closed 3 years ago

jburel commented 3 years ago
pwalczysko commented 3 years ago

comment on the video in https://openmicroscopy.slack.com/archives/C011XLYFHUY/p1605029056002200

pwalczysko commented 3 years ago

repo2docker run locally fails for me with

Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... Killed
Removing intermediate container 6d6f9a04f1f9
The command '/bin/sh -c conda env update -p ${NB_PYTHON_PREFIX} -f "binder/environment.yml" && conda clean --all -f -y && conda list -p ${NB_PYTHON_PREFIX}' returned a non-zero code: 137
pwalczysko commented 3 years ago

on mybinder, all worked as expected.

jburel commented 3 years ago

@pwalczysko I think you are having the same problem locally than the one I had last week I had to create a new conda env with repo2docker master branch

pwalczysko commented 3 years ago

Yes, thank you, after

pip install https://github.com/jupyterhub/repo2docker/archive/master.zip

things started to work on repo2docker.

All looks good here, except the overarching strangeness with the cut-off image, see https://github.com/ome/omero-analysis-desktop/pull/3#issuecomment-725411362

To me it looks like if you were fetching just part of the data from S3 - which is fine, but your comment in https://github.com/ome/omero-analysis-desktop/pull/3#issuecomment-725269524 suggests that this is not the case and it is not expected @jburel ?

pwalczysko commented 3 years ago

See https://github.com/ome/omero-analysis-desktop/pull/3#issuecomment-725975410 for the truncation problem - it is solved.

ready to mrege fmpov