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ome / omero-guide-ilastik

BSD 2-Clause "Simplified" License
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cap numba #26

Closed jburel closed 3 years ago

jburel commented 3 years ago

When investigating issue #25, I noticed that using the itk widget no longer works due to change in numba, package has changed location (dependency of https://github.com/jni/skan). To test run pixel_classification.ipynb check that you can run the cell loading the dependency without error

cc @pwalczysko

github-actions[bot] commented 3 years ago

Binder :point_left: Launch a binder notebook on branch _buildenv

pwalczysko commented 3 years ago

When I build from the doc using Option 2, and build from this branch, I still get

conda env update -n ilastik --file binder/environment.yml
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound: 
  - fastfilters==0.2.6.post26
jburel commented 3 years ago

This is a different problem I have not fixed that yet i.e. #25 is not fixed This only works with repo2docker and with the current state of ilastik I am not sure I will be able to fix the problem on the manual set-up on mac

jburel commented 3 years ago

@pwalczysko did it work when using repo2docker?

pwalczysko commented 3 years ago

This is a different problem I have not fixed that yet i.e. #25 is not fixed This only works with repo2docker and with the current state of ilastik I am not sure I will be able to fix it

Yes, understood, I ran MyBinder and all works fine. Ready to merge fmpov