Py3 setup - Githubissues

ome / omero-install

OMERO installation scripts

https://www.openmicroscopy.org/omero

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Py3 setup #216

Closed jburel closed 4 years ago

jburel commented 4 years ago

Update to use python3 and virtual env
For convenience, we only use one virtualenv. Web is kept for convenience but it will no longer appears in the ome-doc i.e. we recommend server and web to be separated Web installation doc is generated by omeroweb-install

pwalczysko commented 4 years ago

[root@b9e774350374 /]# PGSETUP_INITDB_OPTIONS=--encoding=UTF8 /usr/pgsql-10/bin/postgresql-10-setup initdb
Failed to get D-Bus connection: Operation not permitted
failed to find PGDATA setting in postgresql-10.service

will-moore commented 4 years ago

I see that https://py3-ci.openmicroscopy.org/jenkins/job/OMERO-docs/lastSuccessfulBuild/artifact/omero/_build/html/sysadmins/version-requirements.html lists Postgres 11 as the optimal (best tested etc) for OMERO 5.6, but this guide uses Postgres 10?

will-moore commented 4 years ago

Also we specify Java 1.8 in this guide, but requirements page lists Java 11

will-moore commented 4 years ago

Manually went through https://py3-ci.openmicroscopy.org/jenkins/job/OMERO-docs/lastSuccessfulBuild/artifact/omero/_build/html/sysadmins/unix/server-centos7-ice36.html on a clean CentOS 7 Docker image and all worked fine. Started server and imported an image. 👍

will-moore commented 4 years ago

Ooops - I realise I used docker CentOS7 with python 2 not 3 (following my old blog post http://will-moore.github.io/omero-install-testing-with-docker/). How do I get an CentOS7 image with python3?

will-moore commented 4 years ago

Sorry - ignore that - I can see that the steps involved install of python3

joshmoore commented 4 years ago

Merging along with https://github.com/ome/ome-documentation/pull/2038#issuecomment-561349685