Testing mapr using OmeroPy test

[atarkowska]

This PR initialize testing mapr using OmeroPy

• clean up mapr_settings.py sysadmin needs to set up them manually:

  $ bin/omero config set omeroweb.mapr.config '[ { "menu": "gene", "config": { "default": ["Gene Symbol"], "all": [ "Gene Symbol", "Gene Identifier" ], "ns": [ "openmicroscopy.org/mapr/gene" ], "label": "Gene" } }, { "menu": "genesupplementary", "config": { "default": [], "all": [], "ns": [ "openmicroscopy.org/mapr/gene/supplementary" ], "label": "Gene supplementary" } }, { "menu": "sirna", "config": { "default": ["siRNA Identifier"], "all": ["siRNA Identifier", "siRNA Pool Identifier"], "ns": ["openmicroscopy.org/mapr/sirna"], "label": "siRNA" } }, { "menu": "sirnasupplementary", "config": { "default": [], "all": [], "ns": [ "openmicroscopy.org/mapr/sirna/supplementary" ], "label": "siRNA supplementary" } }, { "menu": "phenotype", "config": { "default": ["Phenotype"], "all": ["Phenotype", "Phenotype Term Accession"], "ns": ["openmicroscopy.org/mapr/phenotype"], "label": "Phenotype" } }, { "menu": "compound", "config": { "default": ["Compound Name"], "all": ["Compound Name"], "ns": ["openmicroscopy.org/mapr/compound"], "label": "Compound" } }, { "menu": "compoundsupplementary", "config": { "default": [], "all": [], "ns": ["openmicroscopy.org/mapr/compound/supplementary"], "label": "Compound supplementary" } }, { "menu": "organism", "config": { "default": ["Organism"], "all": ["Organism"], "ns": ["openmicroscopy.org/mapr/organism"], "label": "Organism" } }, { "menu": "others", "config": { "default": ["Others"], "all": ["Others"], "ns": ["openmicroscopy.org/omero/bulk_annotations"], "label": "Others" } } ]'

  see test_config.py, yeah that is a long one :-)

• clean up app config names
• add version and utils methods
  • add mapr_suffix_url to version mapr statics
• add integration and unit tests
• PEP standard cleanup
• lowercase autocomplete query param in a request, to help caching
• add tests using docker container https://hub.docker.com/r/openmicroscopy/omero-test-daemon-c7/

[joshmoore]

This can be rebased now.

[atarkowska]

@jburel I don't understand your comments. This PR is not ready for review, I will list it once is done.

[jburel]

I started to have a quick look (was coming from https://github.com/openmicroscopy/openmicroscopy/pull/4932, I wanted to understand things) Ignore if they are not useful

[joshmoore]

Just a heads up that this will need rebasing/merging from origin.

[atarkowska]

Test is finally passing, I am going to write more complex tests for other views. To test against multiple CIs I also need to allow extra args for omego in https://github.com/openmicroscopy/omero-test-daemon-c7-docker/pull/3

[atarkowska]

Still need to fix issue when config is not set

2016-12-07 18:58:03,688 ERROR [                          django.request] (proc.17640) handle_uncaught_exception():256 Internal Server Error: /web/webclient/
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-web/omero-virtualenv/lib/python2.7/site-packages/django/core/handlers/base.py", line 119, in get_response
    resolver_match = resolver.resolve(request.path_info)
  File "/home/omero/workspace/OMERO-web/omero-virtualenv/lib/python2.7/site-packages/django/core/urlresolvers.py", line 365, in resolve
    for pattern in self.url_patterns:
  File "/home/omero/workspace/OMERO-web/omero-virtualenv/lib/python2.7/site-packages/django/core/urlresolvers.py", line 401, in url_patterns
    patterns = getattr(self.urlconf_module, "urlpatterns", self.urlconf_module)
  File "/home/omero/workspace/OMERO-web/omero-virtualenv/lib/python2.7/site-packages/django/core/urlresolvers.py", line 395, in urlconf_module
    self._urlconf_module = import_module(self.urlconf_name)
  File "/usr/lib64/python2.7/importlib/__init__.py", line 37, in import_module
    __import__(name)
  File "/home/omero/workspace/OMERO-web/OMERO.web/lib/python/omeroweb/urls.py", line 84, in <module>
    __import__(urlmodule)
  File "/home/omero/workspace/OMERO-web/omero-virtualenv/lib/python2.7/site-packages/omero_mapr/urls.py", line 36, in <module>
    DEFAULT_CONFIG = mapr_settings.CONFIG.iterkeys().next()
StopIteration

NOTE: I haven;t fixed that but there is a test catching that error. I will add better handler for empty config in the next version, thought

[joshmoore]

@aleksandra-tarkowska : is this worth a bump to 0.1.8 for IDR 0.3.1?

[atarkowska]

once I fix few bugs :)

[joshmoore]

:+1: my assumption is that we'll need/want a round of refactoring here soon, but very nice to have this in travis!