Annotation update

[jburel]

This is a partial migration of https://github.com/openmicroscopy/openmicroscopy/pull/5925

• The builtin class inputParser's deprecated addParamValue method has been replaced with addParameter.
• Removed some commas that were causing warning from MATLAB code analyzer

[dominikl]

Looks good, haven't noticed any issues. Tested together with #8 and #17 👍