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ome / omero-metadata

OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
GNU General Public License v2.0
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add allow_nan flag to context #60

Closed jburel closed 3 years ago

jburel commented 3 years ago

The problem appears when I ran 

omero metadata populate --context bulkmap --batch 100 --cfg idr0113-experimentA-bulkmap-config.yml Project:1855

the change was tested in the context above

omero metadata populate --context bulkmap --batch 100 --cfg idr0113-experimentA-bulkmap-config.yml Project:1855
Using session for demo@localhost:4064. Idle timeout: 10 min. Current group: Public
_save_annotation_and_links with batch size 100
INFO:omero_metadata.populate:Created/linked 110 MapAnnotations (total 110)
INFO:omero_metadata.populate:Created/linked 100 MapAnnotations (total 210)
INFO:omero_metadata.populate:Created/linked 10 MapAnnotations (total 220)

cc @sbesson

dominikl commented 3 years ago

With latest release version 0.8.1 I getTypeError: __init__() got an unexpected keyword argument 'allow_nan', with the PR it works fine. Looks good 👍