fetch-ms-zarr: use s3 layout (spec.md v0.1)

ome / omero-ms-zarr

Experimental micro-service for implementing the Zarr spec over HTTP

https://www.openmicroscopy.org/omero

GNU General Public License v2.0

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fetch-ms-zarr: use s3 layout (spec.md v0.1) #17

Closed joshmoore closed 4 years ago

joshmoore commented 4 years ago

This updates the fetch script to download files from S3 (EBI & UoD). This is the layout that the microservice likely will want to implement over time. Up for discussion is certainly the URL format ({url}/idr/zarr/v0.1/{image}.zarr/). Note also that the multiscale metadata currently differs.

cc: @mtbc

joshmoore commented 4 years ago

I'd invite @manics on that one. Seems like he preferred supporting both everywhere?

manics commented 4 years ago

No, I think we should only have -. The only reason I didn't remove the _ version from omero napari was for backwards compatibility.

Edit: If everyone agrees I'm happy to open an MR removing the _ option completely from omero napari

joshmoore commented 4 years ago

Updated argument style. Merging.