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ome / omero-ms-zarr

Experimental micro-service for implementing the Zarr spec over HTTP
https://www.openmicroscopy.org/omero
GNU General Public License v2.0
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Rechunk script #22

Closed joshmoore closed 4 years ago

joshmoore commented 4 years ago

Permits copying an array from one Zarr store to another while applying a new chunk size. Dask from_zarr and to_zarr are used to perform this in parallel. For long running tasks, a dashboard can be activated with --distributed to watch the processing occur. Multiscale metadata will need to be updated for the Zarr group after the fact.

mtbc commented 4 years ago 
(zarr) mtbc@ls28101:~/src/omero-ms-zarr/zarr$ ../src/scripts/rechunk.py -h
  File "../src/scripts/rechunk.py", line 49
    help=("comma-separated string of chunk sizes "
    ^
IndentationError: unexpected indent
(zarr) mtbc@ls28101:~/src/omero-ms-zarr/zarr$ /usr/bin/env python --version
Python 3.7.7