First version of mask metadata

[joshmoore]

see also:

• [x] https://github.com/ome/omero-cli-zarr/pull/11
• [x] https://github.com/ome/omero-cli-zarr/pull/12
• [x] https://github.com/ome/ome-zarr-py/pull/30
• [x] https://github.com/IDR/SubmissionWorkflow/pull/7
• https://github.com/IDR/idr-zarr-tools

[joshmoore]

Changes pushed, @manics. Thanks.

[jburel]

Discussed this morning with @will-moore and @manics, we need to indicate the resolution the mask corresponds to. I have been looking at large images (bdv from IDR), and did some segmentation on resolution 4 then saving the segmented planes. The description for mask should probably indicate the source image/resolution so when we load the mask only, we know what to load next if required.

[joshmoore]

@manics Also happy to open this as a separate PR after this is merged.

If you don't mind, let's go for that. You can take the reins on a next round of PRs without all mine to get in your way while I'm gone.

[joshmoore]

the need to indicate the resolution...

see c15b68b9e8e61e7fd7c547af11f90c91509a5aab

[mtbc]

Staged at https://github.com/joshmoore/omero-ms-zarr/blob/masks-etc/spec.md.

[joshmoore]

https://github.com/ome/omero-ms-zarr/pull/55#issuecomment-656031758 Discussed this morning with @will-moore and @manics, we need to indicate the resolution the mask corresponds to. I have been looking at large images (bdv from IDR)

hmm... @jburel: compare https://gist.github.com/jni/62e07ddd135dbb107278bc04c0f9a8e7 and let me know what you think.