Closed will-moore closed 5 years ago
Travis failed with getting docker running?
travis_fold:end:app-deps
Error response from daemon: Container 5dfdd3c1549cdb97e0ace0285291e7eeaf54eb56b0c206413ad764aedfa8e2db is not running
Stopping omeroparade_db_1 ...
There have been a few issues with test-infra recently. I'll take a look.
Local run passed. I'm guessing resource starvation. Re-running with the hope that an early morning run has less contention. If OMERO is going to regular start failing in travis, we may have to rethink this strategy.
``` 2019-06-23 21:02:33,190 [omego.artifa] INFO Unzipping OMERO.java-5.5.0-ice36-b121.zip app-deps Loaded plugins: fastestmirror, ovl Examining /var/tmp/yum-root-QsQmxV/nodesource-release-el7-1.noarch.rpm: nodesource-release-el7-1.noarch Marking /var/tmp/yum-root-QsQmxV/nodesource-release-el7-1.noarch.rpm to be installed Resolving Dependencies --> Running transaction check ---> Package nodesource-release.noarch 0:el7-1 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: nodesource-release noarch el7-1 /nodesource-release-el7-1.noarch 3.1 k Transaction Summary ================================================================================ Install 1 Package Total size: 3.1 k Installed size: 3.1 k Downloading packages: Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : nodesource-release-el7-1.noarch 1/1 Verifying : nodesource-release-el7-1.noarch 1/1 Installed: nodesource-release.noarch 0:el7-1 Complete! Loaded plugins: fastestmirror, ovl Determining fastest mirrors * base: centos4.zswap.net * epel: mirror.team-cymru.com * extras: centos4.zswap.net * updates: repo1.dal.innoscale.net Resolving Dependencies --> Running transaction check ---> Package npm.x86_64 1:3.10.10-1.6.16.0.1.el7 will be installed --> Processing Dependency: nodejs = 1:6.16.0-1.el7 for package: 1:npm-3.10.10-1.6.16.0.1.el7.x86_64 --> Running transaction check ---> Package nodejs.x86_64 1:6.16.0-1.el7 will be installed --> Processing Dependency: libuv >= 1:1.9.1 for package: 1:nodejs-6.16.0-1.el7.x86_64 --> Processing Dependency: libicudata.so.50()(64bit) for package: 1:nodejs-6.16.0-1.el7.x86_64 --> Processing Dependency: libicui18n.so.50()(64bit) for package: 1:nodejs-6.16.0-1.el7.x86_64 --> Processing Dependency: libicuuc.so.50()(64bit) for package: 1:nodejs-6.16.0-1.el7.x86_64 --> Processing Dependency: libuv.so.1()(64bit) for package: 1:nodejs-6.16.0-1.el7.x86_64 --> Running transaction check ---> Package libicu.x86_64 0:50.1.2-17.el7 will be installed ---> Package libuv.x86_64 1:1.29.1-1.el7 will be installed --> Finished Dependency Resolution Dependencies Resolved ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: npm x86_64 1:3.10.10-1.6.16.0.1.el7 epel 2.5 M Installing for dependencies: libicu x86_64 50.1.2-17.el7 base 6.9 M libuv x86_64 1:1.29.1-1.el7 epel 137 k nodejs x86_64 1:6.16.0-1.el7 epel 4.7 M Transaction Summary ================================================================================ Install 1 Package (+3 Dependent packages) Total download size: 14 M Installed size: 51 M Downloading packages: -------------------------------------------------------------------------------- Total 18 MB/s | 14 MB 00:00 Running transaction check Running transaction test Transaction test succeeded Running transaction Installing : 1:libuv-1.29.1-1.el7.x86_64 1/4 Installing : libicu-50.1.2-17.el7.x86_64 2/4 Installing : 1:npm-3.10.10-1.6.16.0.1.el7.x86_64 3/4 Installing : 1:nodejs-6.16.0-1.el7.x86_64 4/4 Verifying : libicu-50.1.2-17.el7.x86_64 1/4 Verifying : 1:libuv-1.29.1-1.el7.x86_64 2/4 Verifying : 1:npm-3.10.10-1.6.16.0.1.el7.x86_64 3/4 Verifying : 1:nodejs-6.16.0-1.el7.x86_64 4/4 Installed: npm.x86_64 1:3.10.10-1.6.16.0.1.el7 Dependency Installed: libicu.x86_64 0:50.1.2-17.el7 libuv.x86_64 1:1.29.1-1.el7 nodejs.x86_64 1:6.16.0-1.el7 Complete! Error response from daemon: Container 5dfdd3c1549cdb97e0ace0285291e7eeaf54eb56b0c206413ad764aedfa8e2db is not running Stopping omeroparade_db_1 ... Stopping omeroparade_web_1 ... oving omeroparade_db_1 ... Removing omeroparade_omero_1 ... Removing omeroparade_web_1 ... oving network omeroparade_default The command ".omero/docker app" exited with 1. ```
Interesting!
omero_1 | psql:omero-20190624-095938-201869.sql:9478: ERROR: relation "i_logicalchannel_emissionwave" already exists
cc: @mtbc @jburel
Change looks fine. I don't assume a test is actually testing this, but travis is regardless green.
See https://github.com/openmicroscopy/openmicroscopy/pull/6054 Use the renamed
_bulk_file_annotations()
from webgateway (see PR above). NB: Usetry/except
so we don't rely on OMERO 5.5.1 since users may want to upgrade OMERO.parade without having latest OMERO.